Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k23
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.48 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  28   5.9  
SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 EHNYTREIVRLMTTLPVPSDRNTLSHSCTERHAHL 523
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 624  LLHTPADLLDAVPGYSDAHASPPSTETVAAGGKNKCAWRSVQECDSVLRSDGT 466
            L  TP    D +PGY D+  S   TE   A  K K A++ V +   V R   T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 317  TPKSRIRAVMTASMRLITLAFSRSTSRHISKARGFIPLLILST 189
            T  SR+ AVM   +  ++L  ++  S+H S A  F  LL+L T
Sbjct: 901  TTGSRLSAVMCRMIAGLSLFTTQGMSQHSSTATTFTRLLVLDT 943


>SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 577 RCTCVTAFDGNRC 539
           RC CV  F GNRC
Sbjct: 33  RCACVAGFSGNRC 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,663
Number of Sequences: 59808
Number of extensions: 434192
Number of successful extensions: 1446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)