Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19k23
(667 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104233-1|AAI04234.1| 118|Homo sapiens late cornified envelope... 32 1.6
BC104232-1|AAI04233.1| 118|Homo sapiens late cornified envelope... 32 1.6
AL353779-8|CAI20982.1| 118|Homo sapiens late cornified envelope... 32 1.6
AL353779-6|CAI20980.1| 118|Homo sapiens late cornified envelope... 32 1.6
AL162596-1|CAI19550.1| 118|Homo sapiens late cornified envelope... 32 1.6
AL353779-7|CAI20981.1| 114|Homo sapiens late cornified envelope... 31 3.7
AL353779-5|CAI20979.1| 118|Homo sapiens late cornified envelope... 31 4.9
AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein pr... 30 6.5
AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein. 30 6.5
U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein. 30 8.5
AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein p... 30 8.5
>BC104233-1|AAI04234.1| 118|Homo sapiens late cornified envelope 1B
protein.
Length = 118
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G+ S S G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>BC104232-1|AAI04233.1| 118|Homo sapiens late cornified envelope 1B
protein.
Length = 118
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G+ S S G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>AL353779-8|CAI20982.1| 118|Homo sapiens late cornified envelope 1C
protein.
Length = 118
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G+ S S G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>AL353779-6|CAI20980.1| 118|Homo sapiens late cornified envelope 1E
protein.
Length = 118
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G+ S S G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>AL162596-1|CAI19550.1| 118|Homo sapiens late cornified envelope 1B
protein.
Length = 118
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G+ S S G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGG 72
>AL353779-7|CAI20981.1| 114|Homo sapiens late cornified envelope 1D
protein.
Length = 114
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G S S G CSS G
Sbjct: 35 PVSSCCSVSSGGCCGSSSGGGCGSNSGGCCSSGG 68
>AL353779-5|CAI20979.1| 118|Homo sapiens late cornified envelope 1F
protein.
Length = 118
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAG 631
P ++ SV G C S G SS G CSS G
Sbjct: 39 PVSSCCSVSSGGCCGSSSGGCCSSGGGGCCSSGG 72
>AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein
protein.
Length = 899
Score = 30.3 bits (65), Expect = 6.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 563 HRLRRKPLLLEAKISARGVRYKSATAYCDQTVLVKWSLIS 444
HR +R+ + +E KI +GV+ K A Y + T V WS +S
Sbjct: 66 HRAQREAVHIE-KIMLKGVQRKRADKYWEYTFKVNWSDLS 104
>AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein.
Length = 855
Score = 30.3 bits (65), Expect = 6.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 563 HRLRRKPLLLEAKISARGVRYKSATAYCDQTVLVKWSLIS 444
HR +R+ + +E KI +GV+ K A Y + T V WS +S
Sbjct: 22 HRAQREAVHIE-KIMLKGVQRKRADKYWEYTFKVNWSDLS 60
>U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein.
Length = 2022
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 470 PSDRNTLSHSCTERHA---HLFLPPAATVSVEGGDACASEYPGTASSKSAGV 616
PSDR+ L HS E+ A LPP TV+ E + S S + G+
Sbjct: 1105 PSDRSPLEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKRESRRQRGL 1156
>AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein
protein.
Length = 2028
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 470 PSDRNTLSHSCTERHA---HLFLPPAATVSVEGGDACASEYPGTASSKSAGV 616
PSDR+ L HS E+ A LPP TV+ E + S S + G+
Sbjct: 1111 PSDRSPLEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKRESRRQRGL 1162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,907,174
Number of Sequences: 237096
Number of extensions: 1912984
Number of successful extensions: 5700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5700
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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