Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k23
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-dom...    29   2.2  
AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted 2-im...    29   2.2  
U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-domain
           protein protein4 protein.
          Length = 253

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 440 IVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEG-GDACASEY 583
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG    C S +
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEASGCRSNH 158


>AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-4 protein.
          Length = 253

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 440 IVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEG-GDACASEY 583
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG    C S +
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEASGCRSNH 158


>U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical
           protein ZC266.2 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 634 LTSTATHTRRFARRCSRVLR-CTCVTAFD 551
           ++S+++++R   R+  RVLR C C+T FD
Sbjct: 160 ISSSSSYSRSKRRQYLRVLRRCLCITIFD 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,931
Number of Sequences: 27780
Number of extensions: 316593
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)