Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k20
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical p...    27   6.6  
AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical ...    27   6.6  

>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 195 EMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLY 311
           +++ E E K+       +IDT++T LRN     E +D Y
Sbjct: 150 KLETETEKKWFAAMRVSDIDTMRTLLRNEPEIIEAKDQY 188


>Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 169 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 267
           + C +T  W    +KKLN WKL    K   S+L
Sbjct: 8   VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40


>AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 169 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 267
           + C +T  W    +KKLN WKL    K   S+L
Sbjct: 8   VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,218,804
Number of Sequences: 27780
Number of extensions: 131661
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)