Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k17
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    29   0.74 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   1.7  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   5.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.9  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 364 HHFIFDAQRIIQCIKEIEGAYG 429
           HH+++D+QRII   + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 369 MVTARTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAALHL-CVD 193
           +V   ++++G  + +GN+GTLI   + F  Y      +   +N  +  R  +   L   D
Sbjct: 332 LVPTLSLLLGNPIPYGNLGTLI--PEPFYYYGDEYLSKAQKINIGQLNRFFSEYDLDASD 389

Query: 192 LYVGGVHVKENKVINHYLLSF 130
                VH   N  ++ Y L F
Sbjct: 390 FLSSSVHKNNNSYLDQYFLDF 410


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 584 NNRQFDINSFTYICIEFIFLKQHAKEFLISFNASRNC 474
           N+R+  +  F  IC+  IF   +++   I   AS NC
Sbjct: 205 NSREIVLTDFGSICLVPIFASNNSEAIAIQDKASENC 241


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 351 VVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKR 229
           ++    +G+ N GT   ++  +I+Y + V F MF++ Y +R
Sbjct: 277 MIFNAILGWNNTGTYGSILS-YIIYWLFVAFIMFLMWYKER 316


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +1

Query: 7   IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTAD 186
           I N   N  R   +  N+QE I  + C  S  + E T  CA+  +   ++ V        
Sbjct: 176 IVNFTSNPNRYRFYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235

Query: 187 IQID 198
           IQ+D
Sbjct: 236 IQLD 239


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 370 FIFDAQRIIQCIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQM 549
           F  + QRI+  I+ +    GV   GN      YL  +  A K+  NSF  C K+I  + +
Sbjct: 170 FAGEQQRIVDEIEYLVD--GVTFSGNSSASR-YLSLIGIAEKMFDNSFRLCLKSIRDVFL 226

Query: 550 YVNELI 567
            + E I
Sbjct: 227 RIFEEI 232


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 281  SILYLYISKCLSSIIANAAERTPHCTFASICMSA 180
            SI+ +Y  KC+ + I+  A     C F ++ +SA
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSA 2810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,183
Number of Sequences: 5004
Number of extensions: 53765
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)