Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k17
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0984 + 33585875-33585877,33586158-33586268,33587604-33588245     31   0.77 
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    29   3.1  
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     29   3.1  
05_03_0259 - 11161447-11161706,11161764-11164266                       29   4.1  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   4.1  
01_01_1125 - 8920590-8924372                                           29   4.1  
06_01_1000 - 7778907-7780721                                           28   7.1  

>01_06_0984 + 33585875-33585877,33586158-33586268,33587604-33588245
          Length = 251

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = -3

Query: 384 GIENKMVTARTVVIG--KTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAA 211
           G++    T  T + G  K   F +VG +I ++KK      L  F + +   CK GR+  A
Sbjct: 60  GVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGRSGDA 119

Query: 210 LHLCVDLYVGGVHVKENKVINHYLLSFCASG 118
             L  ++   G         NH +  FC  G
Sbjct: 120 KALLNEMVKKGTK-PSWLTYNHLIHGFCKEG 149


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +1

Query: 400  CIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCL 579
            C+ E+E  + +   G+V      + Q   ALK       CC KN    Q+ V +L S  L
Sbjct: 1527 CLCEVEDPFKLESCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRS--L 1584

Query: 580  LFIEK 594
            L  EK
Sbjct: 1585 LSSEK 1589


>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCAS 121
           V+   +LY+ LV +      +CK G    AL   VD+Y  G+ V  + + N  L SF   
Sbjct: 505 VLPNNVLYTTLVFY------FCKAGHAKEALKYFVDIYRSGL-VANSVIHNALLCSFYRE 557

Query: 120 G 118
           G
Sbjct: 558 G 558



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 330 GFGNVGTLIIVIKKFILYSI---LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKE 163
           G G +   I +  + +  S+   +  +   I  YC+ GRT  A  +  ++ + GV   E
Sbjct: 346 GEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSE 404


>05_03_0259 - 11161447-11161706,11161764-11164266
          Length = 920

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 115
           V + M I  YC+RGR   A  +  ++   G+HV    V N  +   C  GR
Sbjct: 325 VAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGR 374


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +1

Query: 118 SACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGVRSAAFAIIDDKHLEMYKYRIENK 288
           S CA  + +     +  +M  +D  IDA+V C + +   +  D +  E    R+  K
Sbjct: 178 STCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEK 234


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 279  YSI-LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCLAR 103
            YS+ L  + + +   CK G    AL LC  +   G  ++ N VI++ +L+      CL  
Sbjct: 887  YSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEG--IQPNIVIHNSVLNGLCQQGCLTE 944

Query: 102  IWR 94
             +R
Sbjct: 945  AFR 947


>06_01_1000 - 7778907-7780721
          Length = 604

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSF-CASG 118
           ++ F   +  YCK G+   AL +   +   G+H   N VI + L+ F C  G
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIH--PNNVIYNTLIDFLCKRG 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,060
Number of Sequences: 37544
Number of extensions: 326341
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)