Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k17
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         31   0.78 
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  29   2.4  
SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)                   29   4.2  
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)          28   5.5  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          28   7.3  
SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)              28   7.3  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   27   9.7  

>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQ 149
           K Y + +TC     +Y ++  +      I  LRRF+CRR      +SYQ
Sbjct: 724 KRYGVLFTCMASRAIYLEVAHSLETDWYINALRRFICRRGPVREMRSYQ 772


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 LKQLRDALKLIKNSFACCFKNINSMQMYVNEL 564
           +KQLRD L+  K S   C K + S+Q +VN L
Sbjct: 821 IKQLRDELENEKTSTRDCQKKLRSLQDFVNTL 852


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -3

Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL 136
           VIKK +   + V  + F++N  K    + +     D+ +     KEN ++  Y+L
Sbjct: 378 VIKKAVRRQLHVLDETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVL 432


>SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)
          Length = 88

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 262 FPNVYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLR 125
           F  VY+      P A ++ P++++ C   TC   Q  Q+    L++
Sbjct: 26  FGTVYKATWAGTPVAVKVIPIKKYTCAPQTCRTAQEEQATLVALIK 71


>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
          Length = 326

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 253 VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTS 74
           +YR   + RPN  +  P RR      TC +K+   +L      +++L +T      SL +
Sbjct: 142 LYRSSFE-RPNGSKRLPYRRCFVNFMTCNQKRKTVTLAISSQWRKSLKKTKSPRYQSLKT 200

Query: 73  LYF 65
             F
Sbjct: 201 TMF 203


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  VQENIMTSNCASSPYSCEATSAC 126
           +QE+I+   CA   ++CE T+ C
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKC 914


>SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)
          Length = 87

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 113 QRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRPRLQ 238
           +R + Q  +R    T  S TC+PPT      CN  C    +Q
Sbjct: 7   KREIEQANARPLACTAESQTCSPPTKSIGSECNTECAEADVQ 48


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 388 VGHRK*NGDSTHRRHRED-GRVWQ-CRHIDHSN 296
           VG +K +G  TH R +ED G V   CR  DH +
Sbjct: 6   VGRKKDHGTVTHTRRKEDHGNVTHTCRKEDHGD 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,045
Number of Sequences: 59808
Number of extensions: 415643
Number of successful extensions: 1047
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)