Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k16
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   121   2e-26
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   113   5e-24
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    73   5e-12
UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;...    62   1e-08
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    55   2e-06
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    42   0.010
UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P4...    42   0.017
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    41   0.030
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    40   0.039
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    40   0.052
UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep: O...    40   0.052
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    36   0.84 
UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  121 bits (291), Expect = 2e-26
 Identities = 56/73 (76%), Positives = 67/73 (91%)
 Frame = +3

Query: 432 MKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLST 611
           MKRV+CNKVRTVTE+  ++ KI+KTY+L EFDLKNLSSLES+E  K+KLALSKYMAM++T
Sbjct: 1   MKRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINT 60

Query: 612 LEMTQPLLEIFRN 650
           LEMTQPLLE+FRN
Sbjct: 61  LEMTQPLLEVFRN 73


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  113 bits (271), Expect = 5e-24
 Identities = 54/76 (71%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
 Frame = +3

Query: 432 MKRVKCN---KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 602
           MKR KC    KVRTVTEI+NSD+K+QK Y+L EFD+KNL+SLESY+TLKIKL + KYMAM
Sbjct: 1   MKRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAM 60

Query: 603 LSTLEMTQPLLEIFRN 650
           L+TL++TQPLL IFR+
Sbjct: 61  LNTLQLTQPLLTIFRD 76


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 35/67 (52%), Positives = 48/67 (71%)
 Frame = +3

Query: 450 NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 629
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 630 LLEIFRN 650
           L+  FR+
Sbjct: 65  LIATFRD 71


>UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 55.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 484

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   RGDYESSSELKSLRDLNPWVQNTLLKLLIPD 95
           RGDYES+SELKSLRDLNPWVQNTLL+LLI D
Sbjct: 441 RGDYESTSELKSLRDLNPWVQNTLLELLIVD 471


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 25/30 (83%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
 Frame = +1

Query: 328 PPSATG-FMNPLNATMRANPFMNTPXRQML 414
           PP+A G F+NPLNATMRANPFMNTP RQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 20/31 (64%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +1

Query: 328 PPSATG--FMNPLNATMRANPFMNTPXRQML 414
           PP   G  F+NPLNATMRANPF+N   R ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P49 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 498

 Score = 41.5 bits (93), Expect = 0.017
 Identities = 23/30 (76%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = +3

Query: 3   RGDYESSSELKSLRDL-NPWVQNTLLKLLI 89
           RGDYESS   KSL +L N WVQNTLLKLLI
Sbjct: 442 RGDYESS--FKSLHELKNSWVQNTLLKLLI 469


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = +1

Query: 112 MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 291
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 292 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPXR 405
                      + P+A   M  PLN TMRANPF+ TP R
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 331 PSATGFMNPLNATMRANPFMNTPXRQML 414
           P    + NPLNATMRANPF+N   R ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 39.9 bits (89), Expect = 0.052
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +3

Query: 444 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEM 620
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKL 72


>UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep:
           ORF11 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 470

 Score = 39.9 bits (89), Expect = 0.052
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +3

Query: 3   RGDYESSSELKSLRDLNPWVQNTLLKLLI 89
           RGDYES S++K L+DL P VQN + +L+I
Sbjct: 434 RGDYESISDIKLLKDLTPLVQNAVFQLVI 462


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 16/50 (32%), Positives = 32/50 (64%)
 Frame = +3

Query: 444 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKY 593
           K +  RTVTEIV+S+   +K +++ + + KN + L+  +  ++ L ++KY
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKY 59


>UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 398

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 390 EHASXANVVXKCIKMKRVKCNKV--RTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYET 563
           EH +    V K ++ K  KCNKV    + E   + +KIQ+  E   +    +  LE  E 
Sbjct: 209 EHINEKENVIKGLEEKIQKCNKVIKDKIEENETNKKKIQQQNEKINYINDKIQDLER-EQ 267

Query: 564 LKIKLALSKYMAMLSTLEMTQPLLE 638
              K  + KY+  + TL+ T  ++E
Sbjct: 268 KNDKEKIKKYIEKIKTLKKTSTIME 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,201,096
Number of Sequences: 1657284
Number of extensions: 8080731
Number of successful extensions: 18672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18668
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)