Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k15
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.20 
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               31   0.61 
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)              29   1.9  
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)                  28   5.7  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   28   5.7  
SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)                27   7.6  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   7.6  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       27   7.6  
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   27   7.6  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             27   7.6  

>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -1

Query: 526 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 347
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 346 FVGALFDYVVY 314
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
 Frame = +2

Query: 173  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
            G  SE++    +K ++   +NA+   L  AHG   LS+  + E  L+  D V  GS+   
Sbjct: 833  GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSDATK 892

Query: 353  TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVE 523
             +        +Y  ++  N A +++       T  ++       F++ KG      VE
Sbjct: 893  LSYGIKNLELEYESLRDDNLALSAAAAYQNGATFFYEKVNLHKTFVISKGTDSIINVE 950


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 269  DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGT 448
            + +L + +I  K L+++ I K+  N  GT+ +   T  DYG  S N      N    R T
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERST 1432

Query: 449  ANFDIKE 469
                ++E
Sbjct: 1433 KRAALEE 1439


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = +2

Query: 173 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
           G  SE++    +K  +   +NA+   L  AHG   LS+  + E  L+  D V  GS+   
Sbjct: 242 GIQSENMRKLRSKAGDKATSNAKENALNAAHGAKALSEALLFEITLATVDQVVVGSDATK 301

Query: 353 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 499
            +        +Y  ++  N A +++       T  ++       F++ KG
Sbjct: 302 LSYGIKNLELEYESLRDDNFARSAAAAYQNGTTFFYEQVNLHKTFVISKG 351


>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
          Length = 246

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = +2

Query: 173 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
           G  SE++    +K  +    NA+   L  AHG   LS+  + E  L+  D+V  GS+   
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSDATK 184

Query: 353 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 499
             S  +  + +Y  ++  N A +++       T  +        F++ KG
Sbjct: 185 L-SYGVKNLEEYESLRDDNLARSAAAAYQNGTTFFYKQVNLPKTFVISKG 233


>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 131 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 298
           +L L  L E  P+L ++    +SD+  +  ++L N     R    R+  GD    Q+ +A
Sbjct: 77  SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136

Query: 299 EKPLSIDDIVKEGSNKV 349
           E    ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 206 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 87
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
          Length = 736

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +2

Query: 173 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
           G  SE++    +K  +   +NA+   L  AHG   LS+  + E  L+  D V  GS+   
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSDATK 516

Query: 353 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIV 490
            +        +Y  +K  N A +++       T  ++       F++
Sbjct: 517 LSYGIKNLELEYESLKDDNLARSAAAAYQNGTTFFYEQVNLHKTFVI 563


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
 Frame = +2

Query: 173  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
            G  SE++    +K  +   +NA+   L  AHG   LS+  + E   +  D V  GS+   
Sbjct: 792  GIQSENMRKLRSKAGDKATSNAKEIALNAAHGARALSEALLFEITFATVDQVVVGSDATK 851

Query: 353  TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDN 529
             +        +Y  ++  N A +++       T  ++       F++ K +T +K  E  
Sbjct: 852  LSYGIKNLELEYESLRDDNLARSAAAAYQNGTTFFYEQVNLYKTFVISK-VTDSKIKESV 910

Query: 530  GMLR 541
             + R
Sbjct: 911  NLPR 914


>SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
 Frame = +2

Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
           T   + +S +EAS      S  V   + +    +        +   HG++  S   +A K
Sbjct: 6   TKKADQDSGSEASSPAASDSTPVSESQKEESRRRSGRQSKQRILFGHGESPASTSSLARK 65

Query: 305 P------LSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRG 445
           P      +++D+   E  ++ G +S F G+      ++P    T    T TRG
Sbjct: 66  PGSTKKRVTVDESGSEDEDRTGKSSDFEGSSDRSDDETP--TPTPKKNTPTRG 116


>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
          Length = 506

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = +2

Query: 173 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 352
           G  SE++    +K  +   +NA+   L  AHG   LS+  + E  L+  D V  GS+   
Sbjct: 79  GIQSENMRKLRSKAGDKATSNAKENALYAAHGAKALSEALLFEITLATVDQVVVGSDATK 138

Query: 353 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 499
            +        +Y  ++  N A +++       T  ++       F++ +G
Sbjct: 139 LSYGIKNLELEYESLRDDNLARSAAAAYQNGTTFFYEQVNLHKTFVISQG 188


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 230 NNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDY-GVKSPN 406
           +NA+   L  AHG   LSQ  + E  L+  D V  GS+    +        +Y  ++  N
Sbjct: 14  SNAKENALNAAHGAKALSQALLFEITLATVDQVVVGSDATKLSYGIKNLELEYKSLRDHN 73

Query: 407 AASTSSNVTMTRGTANFDIKEFKSMFIVFKG 499
            A +++       T  ++       F++ KG
Sbjct: 74  LARSAAAAYQNGTTFFYEQVNLHKTFVISKG 104


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 443  GTANFDIKEFKSMFIVFKGITPTKTVEDNGMLRFE 547
            GT  FD+K   +   +F+G    K +ED+  + FE
Sbjct: 4931 GTRTFDVKVEDTTTSLFEGTVRPKFIEDDSFVPFE 4965


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 246 PICASHTAIIN*AKC-ILPKNRYL*TT*SKRAPTKWALTAFFWAPYTTMELNRQT 407
           P+  +H+ II    C    K     +T S+ APT    TA F+ PY    L R++
Sbjct: 190 PVAETHSCII---PCPTTQKTTTKPSTTSQDAPTNLTATAVFYLPYAVHRLKRKS 241


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 76  ENRVIDRFARTDLSLLDECIKFKFLNRGVAQFRAEQRIGGIRREQT 213
           E R +DRF+    + +  CI  +F  R  A+   E R+  +R++QT
Sbjct: 852 ERRGVDRFSEKPQAQITRCIPHRF--RLTARHSKELRVCMLRQQQT 895


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,133
Number of Sequences: 59808
Number of extensions: 319605
Number of successful extensions: 811
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)