Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k09
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    30   0.28 
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.4  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   3.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.9  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +3

Query: 183 VWKDSATTAAIYDELEKGMSPYV-GELKSQVPYELPALPSNDRISYLFKYYWN---CSVK 350
           +WK S    +I   LE  ++ +  G LK+++   +     N   + L K ++N     +K
Sbjct: 394 IWK-SHELPSIQFHLEASINDWTSGILKNRITKGIKISSINSGATMLLKLHYNWKLLDIK 452

Query: 351 ATFRFLVELPTHTSNAVFKTYD-FISSSLETPEPHQEK 461
           A   +   +P HTS  VF + +  +S S +T    Q++
Sbjct: 453 ALISYHFAIPVHTSTFVFASSERDVSFSPKTVRDDQKR 490


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 312 SYLFKYYWNCSVKATF-----RFLVELPTHTSNAVFKTYDF 419
           SY+F++ WN    A F     R + +LP+ T+N V  + +F
Sbjct: 169 SYMFQFVWNHQALAIFPDLSVRQIYKLPSPTANIVPLSQEF 209


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 292 NAGSSYGTWLFSSPTYGD 239
           N G+S GT LFSS T+G+
Sbjct: 19  NTGTSAGTGLFSSNTFGN 36


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 405 KTYDFISSSLETPEPHQ 455
           K YDF+S SL+ P  H+
Sbjct: 438 KIYDFLSKSLQRPVAHE 454


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 500 NNKLQLLSKSSFIFFLMWF 444
           N KL+LL   S  FFL W+
Sbjct: 4   NEKLKLLGLLSISFFLQWY 22


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 298 EGNAGSSYGTWLFSS--PTYGDIPFSSSSYIAAVVALSFHTPLSIV*Y 161
           EG   S  G +L +   P Y  I   +S  I A+V L  HT + I+ Y
Sbjct: 307 EGQDMSVIGNFLENHDLPRYTSITNDTSQDIGAIVFLLLHTGIPIIYY 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,473
Number of Sequences: 5004
Number of extensions: 49842
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)