Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k09
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)                   28   6.3  

>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 195 SATTAAIYDELEKGMSPYVG 254
           SA   A Y+E +KG++PYVG
Sbjct: 105 SAVQFAAYEEYKKGIAPYVG 124


>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 307 LSLEGNAGSSYGTWLFSSPTYGDIPFSSSSYIAAVVALSF 188
           ++  G    S    L   P++GD  FS  + I A VA+SF
Sbjct: 1   MAANGTTNGSTSNTLGCGPSFGDSYFSKVAIITANVAMSF 40


>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 311

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 219 DELEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNC 341
           D   +GM      L+ +  ++ P  P     SY  +YYWNC
Sbjct: 141 DPASEGMFDNGSFLRRRKRFKRPRPPDGMSGSYGLQYYWNC 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,625
Number of Sequences: 59808
Number of extensions: 326431
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)