Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k09
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical ...    31   0.44 
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    30   1.4  
Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical ...    29   1.8  
AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    28   4.1  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      28   5.5  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    28   5.5  
AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor o...    28   5.5  
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical
           protein W04C9.2 protein.
          Length = 102

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 123 KFGVKSALLGSAVYYTIDKGVWK-DSATTAAIYDELEKGMSPYVGELKSQVPYELPALPS 299
           K G+K  L+  AV  +ID  +W  ++   + +Y +L+K + P       Q       LP+
Sbjct: 9   KLGIKVGLVAGAVKLSIDNDIWSTNNVKGSELYQKLKKYILPGTVVFPEQ-------LPT 61

Query: 300 NDRISYLFKYYWNCSVKATFRFLVELPT 383
            + +       WN +V + F  +  +P+
Sbjct: 62  VEDVQLKAGGKWNSAVDSVFTTIENVPS 89


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 292 YLLMTGYHICSSTTGIAVLKLHLDF*SNCLPILVMQFSRHTTL--FHHLWKLQNHIK 456
           YL+  GYH  + T GI V      F S  L +LV Q  R  TL  F   WK++ +++
Sbjct: 270 YLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATLRIFKCRWKVKTNVR 326


>Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical
           protein ZC302.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +3

Query: 135 KSALLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRIS 314
           KS L G     T++  V K+   T ++ D ++   + ++G+ +     EL  +P    I 
Sbjct: 71  KSMLDGLKSQCTVNTVVLKNMLITKSVEDSVKLNAARFLGKSEK----ELMDIPE---IK 123

Query: 315 YLFKYYWNCSVKAT 356
            +F+ YWNC   A+
Sbjct: 124 QMFQQYWNCRKTAS 137


>AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1b protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 168 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 296
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 52  TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 94


>AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1a protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 168 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 296
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 175 TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 217


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 KECHHMSGN*RAKFHTNYQHYLLMTG 309
           +EC  +SG    K+ TNY + LL+ G
Sbjct: 110 QECERISGKSETKYETNYCYVLLIPG 135


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 EKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLVELPTHTSNAVFK 407
           EK  S YV +  SQ+  E P+L  +  ++      W  S+ AT  F +       N+V  
Sbjct: 434 EKSPSNYVVKTTSQITGESPSLDFDKMLTEKLNSTW--SIPATLTFAITDLKCRINSVLN 491

Query: 408 TYDFISSSLETPEPHQ 455
                 SS  + + HQ
Sbjct: 492 CVISFDSSSSSDKQHQ 507


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 EKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLVELPTHTSNAVFK 407
           EK  S YV +  SQ+  E P+L  +  ++      W  S+ AT  F +       N+V  
Sbjct: 434 EKSPSNYVVKTTSQITGESPSLDFDKMLTEKLNSTW--SIPATLTFAITDLKCRINSVLN 491

Query: 408 TYDFISSSLETPEPHQ 455
                 SS  + + HQ
Sbjct: 492 CVISFDSSSSSDKQHQ 507


>AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform b protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 228 EKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLVELPTHTSNAVFK 407
           EK  S YV +  SQ+  E P+L  +  ++      W  S+ AT  F +       N+V  
Sbjct: 434 EKSPSNYVVKTTSQITGESPSLDFDKMLTEKLNSTW--SIPATLTFAITDLKCRINSVLN 491

Query: 408 TYDFISSSLETPEPHQ 455
                 SS  + + HQ
Sbjct: 492 CVISFDSSSSSDKQHQ 507


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 107 LLHDVKVWREICVTWIRSVLHNRQRCVER*CY 202
           +L  +K + E+CV W + +  N Q+C+++ C+
Sbjct: 168 MLFVLKNFGELCVKWAKKIQFNVQQCLKK-CF 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,706
Number of Sequences: 27780
Number of extensions: 267804
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)