Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k09
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g38380.1 68414.m04694 hypothetical protein                          33   0.18 
At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2...    30   1.3  
At5g13750.2 68418.m01601 transporter-related                           29   2.2  
At5g13750.1 68418.m01600 transporter-related                           29   2.2  
At3g51550.1 68416.m05645 protein kinase family protein contains ...    29   2.9  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   5.1  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   6.8  
At3g42436.1 68416.m04393 hypothetical protein                          27   9.0  

>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 30/118 (25%), Positives = 50/118 (42%)
 Frame = +3

Query: 24  IATMFHNFSRKFELHNLPKN*LTLDIHICFTMLKFGVKSALLGSAVYYTIDKGVWKDSAT 203
           +  +F +F   FE   LP   LT  I      L F    +L+ +A      +G+   SA 
Sbjct: 260 LTPIFEHFRISFEGEELPCTALT-KITSEHEELSFCPDPSLMHAAPRTRRHRGLASRSAP 318

Query: 204 TAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLVEL 377
           T    + ++      VG   S +PY+LP+ P      ++F+ Y   S K+ +  +  L
Sbjct: 319 TQTEDEFIDPAEGLRVGSSSSALPYQLPSPPPIPMEPHVFQQYVVDSFKSVWNAIATL 376


>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
           (GLUR9) plant glutamate receptor family, PMID:11379626
          Length = 947

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 201 TTAAIY--DELEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLVE 374
           +  AIY  +EL +G+ PY+ +    V  +   +PS      + K  +    + T  F+V 
Sbjct: 167 SVVAIYVDNELGEGIMPYLFDALQDVQVDRSVIPSEANDDQILKELYKLMTRQTRVFVVH 226

Query: 375 LPTHTSNAVFK 407
           + +  ++ +F+
Sbjct: 227 MASRLASRIFE 237


>At5g13750.2 68418.m01601 transporter-related
          Length = 392

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = +3

Query: 237 MSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLV-----ELPTHTSNAV 401
           + P +G   +Q   + P+L S D I   F ++  C   + F FLV      +P    N  
Sbjct: 94  IGPAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHK 153

Query: 402 F---KTYDFISSSLETPEPHQEKDK 467
           F   ++YD +    + PE ++  ++
Sbjct: 154 FNDDESYDALKDLSDDPESNKVAER 178


>At5g13750.1 68418.m01600 transporter-related
          Length = 478

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = +3

Query: 237 MSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCSVKATFRFLV-----ELPTHTSNAV 401
           + P +G   +Q   + P+L S D I   F ++  C   + F FLV      +P    N  
Sbjct: 180 IGPAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHK 239

Query: 402 F---KTYDFISSSLETPEPHQEKDK 467
           F   ++YD +    + PE ++  ++
Sbjct: 240 FNDDESYDALKDLSDDPESNKVAER 264


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 NCLPILVMQFSRHTTLFHHLWKLQN 447
           NC  ILV  +  H T+  HL+K QN
Sbjct: 603 NCEMILVYDYMAHGTMREHLYKTQN 627


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 310 ILSLEGNAGSSYGTWLFSSPTYGDIPFSSSSYIAAVVALS 191
           +L+  G+  S+  T   SSP +   PFS  S  AA+ ++S
Sbjct: 120 LLATSGSGASATSTSSTSSPLHSSSPFSFGSAPAAITSVS 159


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 138 SALLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGEL 260
           SAL  S+   +ID+ +     TT++++DEL+  +S + GE+
Sbjct: 625 SALTTSSAC-SIDEFLASGDETTSSLFDELQSALSSHQGEM 664


>At3g42436.1 68416.m04393 hypothetical protein
          Length = 398

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 ALLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRISYL 320
           +LL +A      +G    SA T    + ++    P VG   S +PY+LP+ P       +
Sbjct: 327 SLLHAAPRTRRQRGSALGSAPTQTEEEFIDPTGGPRVGSSSSALPYQLPSPPPIPMEPQV 386

Query: 321 FKYY 332
           F+ Y
Sbjct: 387 FQQY 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,120
Number of Sequences: 28952
Number of extensions: 239016
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)