Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k08
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   5.2  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.8  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.0  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.0  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSMTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 ARILDLGVCCNYHRRDRAVCRKSMTPTPQDVS 388
           A +L+  +C NYH+R  AV    + P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -3

Query: 352 THSTIATMIIATNS*IKNSSGHDSVDENDRACIFYIDVPSLFKS 221
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS  +S
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPSSTQS 516


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 628 PALLHTPADFHDAVPGYSGAHASPPSTETVAA 533
           PA+     +F   VP  +GA   PPS E++ A
Sbjct: 129 PAIFDENGEFVGDVPSVAGAIERPPSYESLPA 160


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 PVPSNRNTLSHSCTERHA 515
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 565 ASPPSTETVAAGGKNN 518
           A  PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,400
Number of Sequences: 5004
Number of extensions: 50249
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)