Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k08
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    31   0.57 
10_01_0287 - 2982618-2982810,2983111-2983196                           29   3.0  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.3  
10_08_0742 + 20244984-20247008                                         28   7.0  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   7.0  
03_05_1070 + 30125131-30127029                                         28   7.0  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 610 PADFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           PAD  D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>10_01_0287 - 2982618-2982810,2983111-2983196
          Length = 92

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 621 CYTHPPIFMMLFQGTQVHMRHP 556
           CY H P++  L  G Q+   HP
Sbjct: 38  CYIHKPVYQELLHGDQLRFTHP 59


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 565 ASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 428
           + P +  T   GGK N    S Q   + +  DG+ K ++N+TI+ V
Sbjct: 174 SEPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTIAPV 218


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 315 TPKSRIRAVMTASMRMIAPVFSTSTSRHFSKAR 217
           TP SR+    T + R + PV +T T  H S  R
Sbjct: 89  TPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRR 121


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 538 AAGGKNNCAWRSVQECDS-VLRLD 470
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,280
Number of Sequences: 37544
Number of extensions: 329617
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)