Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k08
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)                   27   9.5  
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 521
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 622  LLHTPADFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGT 464
            L  TP    D +PGY  +  S   TE   A  K   A++ V +   V RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 462 VKWSLISRSHEYNYVLNNGSTELCQETS 379
           V+W +I  S  Y+     GS +LC +TS
Sbjct: 58  VQWIIIPLSSHYSERTGKGSAQLCSQTS 85


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 508 ATRSYFCLQQQRFPSKGVTHVHLSTLEQHH-ENRRVCVAVLV 630
           A R   CL  +R  SKG   V +     H  E RR CVA ++
Sbjct: 386 AERLAQCLSTRRITSKGTGEVFMKPCSVHESEARRDCVAKVI 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,800
Number of Sequences: 59808
Number of extensions: 398698
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)