Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k07
         (539 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4X5G3 Cluster: Putative uncharacterized protein; n=3; ...    33   5.6  

>UniRef50_Q4X5G3 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1010

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = -2

Query: 427 NFNIK*SCFFLYVLHISVILEFKFI*FSYQKLYSSLINRF*SFVQ---LYYYLNLLPTLG 257
           N N +  C +L++LHIS I + +FI  +++K    +I  F   ++   +Y   N+L  L 
Sbjct: 456 NNNNENLCMYLHLLHISSIHDERFINVNHKKNIDKIITYFYDQIEKLNIYMCTNILCALA 515

Query: 256 R*RIKHAKKFAILFYDLVCAIDVAISKHSWSLL 158
              IK+  ++ I F  ++      I K + S+L
Sbjct: 516 NLNIKN-NEYPIFFNKILNYFRNNIKKMNKSVL 547


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,785,105
Number of Sequences: 1657284
Number of extensions: 6868288
Number of successful extensions: 9104
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9103
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)