Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k07
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09)                   28   5.6  
SB_693| Best HMM Match : efhand (HMM E-Value=2e-09)                    28   5.6  
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)                      27   7.4  

>SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09)
          Length = 508

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 320 NKSFLIICSALLLSEFVTYFG*VTNKTCKKVCHFI 216
           +K   ++CSALL++  VT      NK   K C +I
Sbjct: 208 DKEAALLCSALLVNSTVTRIDLSGNKFSNKACEYI 242


>SB_693| Best HMM Match : efhand (HMM E-Value=2e-09)
          Length = 500

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 320 NKSFLIICSALLLSEFVTYFG*VTNKTCKKVCHFI 216
           +K   ++CSALL++  VT      NK   K C +I
Sbjct: 200 DKEAALLCSALLVNSTVTRIDLSGNKFSNKACEYI 234


>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
          Length = 451

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 YIKINR-SQHVHCF*LLFYTGEEMTINF*HFAKYRI 520
           ++K++R S H HCF +LF+   E T  +  F  YR+
Sbjct: 329 HLKLSRCSIHTHCFRMLFHDLLETTGLYNEFILYRL 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,679
Number of Sequences: 59808
Number of extensions: 207420
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)