Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19k06
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12) 32 0.33
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8) 31 0.77
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5) 31 0.77
SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4) 31 0.77
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8) 30 1.4
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0) 30 1.4
SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2) 30 1.4
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 29 3.1
SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9) 28 4.1
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) 28 4.1
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31) 28 5.4
SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018) 28 5.4
SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56) 27 7.2
SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046) 27 9.5
>SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)
Length = 280
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 145 VRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQG-ISDPQINSLRQLRRM 321
+++ G Y Y+L D+ R+TR D N N QG +SDP ++ +RM
Sbjct: 53 MQSKGERNYHVFYRLCAGAPKQIKDMLRLTRAQDF-NYLN--QGSLSDPNLDDTSDFKRM 109
Query: 322 DNVPDFHYHTKQTRSNAVR 378
D D +K+ +SN R
Sbjct: 110 DASMDNVGFSKEEKSNIYR 128
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 195 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRA-RLSLPHQTDAIQC 371
QP EH + HS Q P+H+Q H +PS + P H Q + SLP Q ++
Sbjct: 771 QPSPEHSQPSPEHS-QPSPEHSQPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHSLPS 829
Query: 372 SQTKL 386
+ L
Sbjct: 830 PTSSL 834
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 195 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQ 326
QP EH Q HS P+H+Q H +PS + P H Q
Sbjct: 750 QPSPEHSLPSQEHS-LPSPEHSQPSPEHSQPSPEHSQPSPEHSQ 792
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267
>SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267
>SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)
Length = 245
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 189
>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
Length = 226
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 146
>SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)
Length = 216
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 104 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 136
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 289 QINSLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPETNVRTPEGVQN 426
++NSL L D+ +FH ++ S A++ +F N +T E N
Sbjct: 3018 EVNSLSMLSTTDSSFNFHEQSQSVTSGAIKSSFSLKNSQTSEESSN 3063
>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 294
N N + N NN + +NNR S+++ NR RNND NI N+ + S+ ++
Sbjct: 85 NNSNNNNRNNNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI-NISRNNSNSRV 140
>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
Length = 267
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 146
>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
Length = 607
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 547 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 579
>SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)
Length = 245
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 189
>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 267
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 291 NKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT 452
N++ P A G+ + SL +T Q + + P+DQ A R AA+P T
Sbjct: 29 NQVSRPRQASGKPRQSSLKTKTSKPQVQEIRKPQDQDKQAARPRDTQAARPKDT 82
>SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9)
Length = 176
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 RFHKCAQRAQCTQPWK--QQISAGLSII*QPVCEHFRHKQNHS*QRCPQ 254
RF K +R Q Q K + + ++II P + RH++NH PQ
Sbjct: 50 RFRKLKRRTQLLQELKTIEDLFQNIAIIRTPSKKRIRHQRNHRESHHPQ 98
>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
Length = 296
Score = 28.3 bits (60), Expect = 4.1
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Frame = +1
Query: 85 NTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVST--SDINRITRNNDVPNI 258
N+ T+ TN S+ N + P N+ +T + + TR+N +PN
Sbjct: 79 NSLTNTTRHNSLTNTTRHNSLTNTTRHNSLPNTARHNSLTNTTRHNSLTNTTRHNSLPNT 138
Query: 259 RNVFQGISDPQINSLRQLRRMDNVPDFHYHT---KQTRSNAV----RQNFPETNVRTPEG 417
+ + NSL + R +++P+ H TR N++ R N P R
Sbjct: 139 ARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSPPNTTR-HNS 197
Query: 418 VQNALQQNPRLHNHMR 465
+ N + N LH+ R
Sbjct: 198 LPNTTRHN-SLHSTTR 212
>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 187 LSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 330
+SN S D R + N +PNI +V P I+ +L R DN+
Sbjct: 143 MSNEGLTSMHDTQRESINISIPNIHSVEILPPSPVISEHNELPRADNL 190
>SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 336 LSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRS 485
+SL + + +Q +LPR + R + AA PPF S N E +R+
Sbjct: 17 MSLVDILSSAKVNQLQLPRKKNLRLVRAKAKLAAHPPFA-SWRNSEEART 65
>SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)
Length = 353
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 222 KQNHS*QRCPQHTQCI-SGHFRPSNKLIAPIAAHGQRARLSLPH 350
KQ+H+ +R + GH PS L P ++H + L+LPH
Sbjct: 195 KQHHNDRRLSREEGSYREGHRSPSQPLFQPPSSHLISSHLTLPH 238
>SB_34463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 88 TRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSD 219
T LT+T A TN AP+ NN Y S N STSD
Sbjct: 35 TTALTTTTALATNT--APTTTTTPNNDYNTSDDYSTNNDYSTSD 76
>SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56)
Length = 499
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +3
Query: 279 FRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQT--KLPRDQRAHARRCSKRTAAKPPFT 452
FRP ++ P+ G R + + + T + R Q AR CS R + P T
Sbjct: 407 FRPPMRIPPPLLTSGTRGSVGSLREAAVFSAAATSSRRTRTQTLTARACSSRPYSNSPIT 466
>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
Length = 632
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 369 CSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSG 488
CS+ DQR H RC+K+ + P+T S E+ +S G
Sbjct: 40 CSKEHKRADQRYHRHRCNKQ-PQEVPYTDSPESSMASLLG 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,800
Number of Sequences: 59808
Number of extensions: 401030
Number of successful extensions: 1440
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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