Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19k06
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32190.1 68414.m03959 expressed protein 34 0.069
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 31 0.48
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas... 29 1.5
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta... 28 3.4
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 28 3.4
At5g15260.1 68418.m01787 expressed protein predicted proteins, A... 28 4.5
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 27 6.0
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta... 27 6.0
At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase, puta... 27 6.0
At1g69640.1 68414.m08012 acid phosphatase, putative similar to G... 27 6.0
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 7.9
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 27 7.9
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 33.9 bits (74), Expect = 0.069
Identities = 21/65 (32%), Positives = 24/65 (36%)
Frame = -3
Query: 334 LARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE*FCLCLKCSQTGC*IIDSPADICCFQ 155
++ C C S F KCP+ C CW CLKC T C CC
Sbjct: 349 VSSCCCPTFKCSSCFGKPKCPK--CSCW---------KCLKCPDTEC-----CRSSCCCS 392
Query: 154 GCVHW 140
GC W
Sbjct: 393 GCFSW 397
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 31.1 bits (67), Expect = 0.48
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 4 VCFKMSFFTNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGY 183
VC+++ FF L+ + P + A T F V PS+ +L + R+QP +
Sbjct: 618 VCYRILFFIVLKLKERAEPALKAIQAKRTMKSLKKRPSFKKV---PSLSSLSSRRHQPLH 674
Query: 184 QLSNNRFVSTSDIN 225
LS+ + TS IN
Sbjct: 675 SLSSQEGL-TSPIN 687
>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
/ digalactosyldiacylglycerol synthase 2 (DGD2) identical
to digalactosyldiacylglycerol synthase (DGD2)
GI:18141112 [Arabidopsis thaliana]
Length = 473
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 166 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 282
R++ ++ + RF+ SD+NR++R + + R+VF S
Sbjct: 375 RHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVFASSS 413
>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 349
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 76 LADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNN--DV 249
L D+ LL F +++ + + + PG Q+ NN+F + R+ NN D+
Sbjct: 173 LQDSKSLLCQPATEFLPMIDEVYHKLVEKTKSTPGAQVENNKFCVSVHFRRVDENNWSDL 232
Query: 250 PN-IRNVFQ 273
N +R+V +
Sbjct: 233 ANQVRSVMK 241
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +1
Query: 34 LRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRF 204
L RV A F ADN L T AG TNV + LG N PG ++ +
Sbjct: 506 LNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLN-MNPGGTFNHGNY 561
>At5g15260.1 68418.m01787 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 234
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 319 MDNVPDFHYHTKQTRSNA 372
M + PDFH+H+KQ+R+++
Sbjct: 17 MAHSPDFHHHSKQSRTSS 34
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 204 CEHFRHKQNHS*QR-CPQHTQCIS 272
C+H RHK S CP+HT+C S
Sbjct: 242 CQHPRHKNVSSGPYLCPKHTKCYS 265
>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
putative similar to SP|O04379 Argonaute protein (AGO1)
{Arabidopsis thaliana}; contains Pfam profiles PF02170:
PAZ domain, PF02171: Piwi domain
Length = 997
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 89 RVF*QALPPVSQMCSTRPVYATLETTDISRAINY 190
RV QALP + TRPVY +E I Y
Sbjct: 442 RVKYQALPAIQTGSDTRPVYLPMELCQIDEGQRY 475
>At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 269
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 58 PNQAS-FLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRIT 234
P Q S + +N LL F V+N + + N + PG ++ NN+F ++ +
Sbjct: 86 PEQGSKYKKENQSLLCQPATEFLPVINEVYKKLVENTQSIPGAKVENNKFCASVHFRCVE 145
Query: 235 RN 240
N
Sbjct: 146 EN 147
>At1g69640.1 68414.m08012 acid phosphatase, putative similar to
GI:5360721 from [Lupinus albus]
Length = 260
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 233 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 322
LV+ MSP +++F +F T+K T +CG W
Sbjct: 163 LVSGMSPRTSIFFFSFATIK-TVDDHCGLW 191
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 RCPQ-HTQCISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRC 419
R PQ H C+S F+ SN+LI + R ++ P T IQ +P D+ + R
Sbjct: 667 RKPQLHRTCVSDEFKESNRLILVTSDVSARG-MNYPDVTLVIQVG---IPSDREQYIHRL 722
Query: 420 SK 425
+
Sbjct: 723 GR 724
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 34 LRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPG 180
L RV + A F A+N L T AG TNV ++ L NR G
Sbjct: 505 LNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDG 553
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,662
Number of Sequences: 28952
Number of extensions: 255760
Number of successful extensions: 641
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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