Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k05
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     99   6e-22
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     97   2e-21
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    95   8e-21
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   4.1  
08_02_1440 - 27113396-27113418,27113976-27114102                       25   9.5  
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253...    25   9.5  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    25   9.5  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 99.1 bits (236), Expect = 6e-22
 Identities = 44/64 (68%), Positives = 56/64 (87%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 232 PPGL 243
           PPGL
Sbjct: 61  PPGL 64


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/64 (67%), Positives = 55/64 (85%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 232 PPGL 243
           PPGL
Sbjct: 61  PPGL 64


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 95.5 bits (227), Expect = 8e-21
 Identities = 42/63 (66%), Positives = 54/63 (85%)
 Frame = +1

Query: 55  PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 234
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 235 PGL 243
           PGL
Sbjct: 92  PGL 94


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 213
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 202 EKAEKLKQSLPPGLQ 246
           E A KLKQ LPPG Q
Sbjct: 25  ENANKLKQFLPPGSQ 39


>07_03_1600 -
           28024495-28024509,28024681-28024731,28025083-28025355,
           28025427-28025554,28025645-28025764,28025856-28025933,
           28025993-28026061,28026183-28026213
          Length = 254

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 185 WSSLTKRRLRNLSRVYLQVSKLK 253
           WS LTK+   N+SRV + ++  K
Sbjct: 77  WSKLTKKVASNVSRVVVSLASFK 99


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 73  IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 195
           ++  +I+A +     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,411
Number of Sequences: 37544
Number of extensions: 104156
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)