Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19k05
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 3.1
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 27 3.1
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 3.1
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 27 3.1
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 27 3.1
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2) 27 4.1
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 26 5.4
SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08) 26 5.4
SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5) 26 7.2
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 26 7.2
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 26 7.2
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 26 7.2
SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_31203| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 25 9.5
SB_50073| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_39785| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 384
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 76 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
K+F+ K R K K V +K P VKF C
Sbjct: 191 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 220
>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 402
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 37 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 213
L V ++ E+ LI A+R AKS ++K PE F +C+ Y L++ K+ A+
Sbjct: 137 LGVSDVDAELLKTARSLISAQRAGAKS-EVK--PEMSAFVSKCNAAAYDLILDGKQTAD 192
>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 398
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 76 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
K+F+ K R K K V +K P VKF C
Sbjct: 359 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 388
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 76 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
Length = 856
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 76 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 708
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 76 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
K+F+ K R K K V +K P VKF C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268
>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 194 VMTRVYRNLEHRTLNLTFSGFFFILT 117
VM R + RT++LTFS F +LT
Sbjct: 198 VMARTVSQITTRTISLTFSRFMVLLT 223
>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
Length = 74
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 67 KDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRF-LYTLVITDKEKAE 213
KD+KD K + + VK KKN + V+ ++ ++ L ++IT K K E
Sbjct: 25 KDLKDVQEKHKTDKEELVKCKKNIKTVEQELATTKHQLNEMLITVKTKIE 74
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 49 NMPREIKDIKDFLIKARRKDAKSVKIKKNPENV 147
N RE KD+ L ++RR +AK+V KN EN+
Sbjct: 1276 NRVRE-KDLTTALDESRRAEAKAVDKVKNLENI 1307
>SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)
Length = 465
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 101 GKTP-NRSK*RRTLRMSSSRFDAQGSCTPWSSL 196
GK+P NR K R L SSS D + S WS L
Sbjct: 2 GKSPSNRDKMREMLEYSSSNDDFRESEDEWSPL 34
>SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)
Length = 303
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 37 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 213
L V ++ E+ LI A+R AK+ PE F +C+ Y L+I K+ A+
Sbjct: 38 LGVSDVDAELLKTARSLISAQRSSAKN---GVTPEMSAFVSKCNAAAYDLIIDGKQTAD 93
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 61 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKL 219
E++ IKD + K+ + V+ K P VKF + YT V+ EK + L
Sbjct: 31 ELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGI-----AYTQVVDLIEKDQVL 78
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 103 KDAKSVKIKKNPENVKFKVRCS 168
+DA I++NPE V FK+ CS
Sbjct: 1793 EDAVVCCIRENPEPVVFKISCS 1814
>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 577
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 73 IKDFLIKARRKDAKSVKIKKNPENVKFKVRC 165
+K+FLI+ K+ + K NPE V ++RC
Sbjct: 476 VKEFLIRKFELGEKTGR-KSNPEQVAIEMRC 505
>SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFK-VRCSRF-LYTLVITDKEKAEKLKQSLP 234
E ++ KDFL A R KSVK K+ + + ++ +R+ L T+ DK+ E++ +
Sbjct: 37 EKEEEKDFLHSAERNSLKSVKPKEEAKELVIPLMKKNRWILPTVEGLDKQAMEEVIKEAQ 96
Query: 235 PGLQ 246
LQ
Sbjct: 97 KDLQ 100
>SB_31203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 116 RSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSK 247
R+K LR SSS + +CT W TK ++ + V + ++
Sbjct: 37 RAKDVGLLRSSSSIPRVEYACTVWDPFTKTNIKRIEMVQRRAAR 80
>SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 46 FNMPREIKDIKDFLIKARRKDAKSVKIKKNP 138
F EIK +K+ + RR AKS+ I+ NP
Sbjct: 518 FKYDYEIKPLKEKSRQQRRVIAKSIDIETNP 548
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 112 KSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 246
K KI ++P++++ CS F +T ++ + + PG +
Sbjct: 44 KKAKIGQSPDSIRSLASCSSFSFTDEVSSNASSSFSSEEESPGFK 88
>SB_50073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 61 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 159
E++ IKD + K+ + V+ K P VKF +
Sbjct: 8 ELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGI 40
>SB_39785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 LRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQV 241
LR+ ++R D QG WS +R+RN S Y +V
Sbjct: 35 LRIKNNRVD-QGLTNLWSYKQGQRVRNTSNNYTRV 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,923
Number of Sequences: 59808
Number of extensions: 127909
Number of successful extensions: 354
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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