Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k05
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   116   3e-27
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.52 
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.6  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   3.6  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    25   8.4  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    25   8.4  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    25   8.4  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  116 bits (280), Expect = 3e-27
 Identities = 52/65 (80%), Positives = 60/65 (92%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 232 PPGLQ 246
           PPG+Q
Sbjct: 61  PPGIQ 65


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 101 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 217
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 82  FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 192
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 186
           +++MP  IK  ++FL+ +  K  K  +K+ K  +    K  C   + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 46  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 153
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 46  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 153
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 46  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 153
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,804,617
Number of Sequences: 27780
Number of extensions: 97077
Number of successful extensions: 326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)