Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k04
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   1.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   6.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   9.0  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 253 IXALLRKK*IQFFFSYFLIRTFXDHNTDFLS 161
           +  +LRK  +Q +F  FL + F D N  F S
Sbjct: 345 LETILRKPNLQTYFFEFLKKNFCDENQRFYS 375


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 110 KLCI*LVFTMFTETD 66
           KLCI ++F ++T+TD
Sbjct: 250 KLCIRILFNIYTQTD 264


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 67  SVSVNIVNTSYIHSFKYCQYGHEYXSIKSA 156
           S  V +++ +  + F+Y  YG  Y S+ +A
Sbjct: 744 SFPVVVISLAAYNQFRYFHYGSAYLSMSAA 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,104,211
Number of Sequences: 5004
Number of extensions: 18011
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)