Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k04
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    27   4.7  

>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 79  NIVNTSYIHSFKYCQYG 129
           N  +  Y+HS K+CQ+G
Sbjct: 605 NTRHVQYVHSIKFCQFG 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,961,693
Number of Sequences: 37544
Number of extensions: 82301
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)