Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k04
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)           29   0.92 
SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)                27   4.9  
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    27   4.9  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         26   8.5  

>SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)
          Length = 423

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  IVNTSYIHSFKYCQYGHEYXSIKSANGI 165
           ++   +IHS +YC  G+++ S    NG+
Sbjct: 130 VIKVRHIHSVEYCLTGNQWQSYPDGNGV 157



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  IVNTSYIHSFKYCQYGHEYXSIKSANGI 165
           ++   +IHS +YC  G+++ S    NG+
Sbjct: 184 VIKVRHIHSVEYCLTGNQWQSYPDGNGV 211


>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
          Length = 306

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 166 KNQYCGXKMFGLKNN*KKTVF----TFSLIEPKLKILIKNYXTVDL 291
           K +YC   +F LKN   K ++     +S ++P L+    NY   +L
Sbjct: 212 KRRYCDFFIFTLKNTFVKRIYFEKNYWSTLKPNLEYFFNNYIAKEL 257


>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 168 FYPVXTFDTXIFMTILTIFKTMYITRIYNVH*NRHL 61
           F PV TFD  ++   LTI +     +IY    NR L
Sbjct: 188 FAPVLTFDQPLYWKALTIIENEPEDKIYQGRENRKL 223


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 30   SGWSLYXFQDLDVCFSEHCKYEL 98
            S +++Y F DL+V   EH  Y+L
Sbjct: 1834 SRYTMYAFSDLNVTLGEHQLYQL 1856


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,487,377
Number of Sequences: 59808
Number of extensions: 110755
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)