Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k01
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +1

Query: 31   NKRSIMNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMV 210
            N  S+ ++G     +L  S + ++Q  +     RN+S  Y   +++V   + + NLN ++
Sbjct: 1022 NNESLADNGLSVIRKLQSSCSSSEQRRSK--RQRNYSVVY--GVSYVLITILEINLNFII 1077

Query: 211  ACNLINTLINFEI 249
             C     +I+ EI
Sbjct: 1078 CCENETKVISLEI 1090


>SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 217 NLINTLINFEINVFGKSLLLSKFVNFCIANSD 312
           NL     NFEI  +G++ L   FV +CI + +
Sbjct: 79  NLTTFRCNFEIQQYGETDLARIFVTYCIKDHE 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,649
Number of Sequences: 59808
Number of extensions: 170440
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)