Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k01
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14410.1 68416.m01823 transporter-related low similarity to S...    27   3.7  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    27   3.7  
At1g63140.2 68414.m07136 O-methyltransferase, putative similar t...    27   3.7  
At1g63140.1 68414.m07135 O-methyltransferase, putative similar t...    27   3.7  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    27   4.8  
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta...    27   4.8  
At4g38495.1 68417.m05442 expressed protein                             27   4.8  
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO...    27   6.4  
At5g62770.1 68418.m07880 expressed protein                             26   8.5  

>At3g14410.1 68416.m01823 transporter-related low similarity to
           SP|Q96A29 GDP-fucose transporter 1 {Homo sapiens},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275; contains 10
           predicted transmembrane domains;
          Length = 340

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 256 FGKSLLLSKFVNFCIANSDGVTIQHKMLTNVLSFLLEK 369
           F K +L SK +NF      G+T+ H + ++VL FLL K
Sbjct: 32  FNKWVLSSKEINFPYPL--GLTLLHMIFSSVLCFLLTK 67


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 53  AATTTQHDYTIQTRTQNKHLQLY 121
           AATTT+  YT +  T NK + LY
Sbjct: 267 AATTTEEQYTAELFTANKLVDLY 289


>At1g63140.2 68414.m07136 O-methyltransferase, putative similar to
           GI:2781394
          Length = 381

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 82  YSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLIN 240
           +++AH  +    + +N   +  +  A++  STL+ K  L +      +NTL++
Sbjct: 171 FTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVD 223


>At1g63140.1 68414.m07135 O-methyltransferase, putative similar to
           GI:2781394
          Length = 286

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 82  YSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLIN 240
           +++AH  +    + +N   +  +  A++  STL+ K  L +      +NTL++
Sbjct: 171 FTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVYKGFEDVNTLVD 223


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 178 MC-LQT*WHTRKNYCDYDWQIKLQV 107
           MC ++  WH + NY DY W++K+ +
Sbjct: 275 MCPVRVHWHVKTNYKDY-WRVKIAI 298


>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
           putative astrocytic NOVA-like RNA-binding protein, Homo
           sapiens, U70477
          Length = 334

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 79  HYS-NAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLN 201
           HYS N H+  + A LF +  H   Y YA+  V+T  + N++N
Sbjct: 196 HYSQNVHSPYSYAGLFYSGFHGPPYAYALPSVATAGY-NSVN 236


>At4g38495.1 68417.m05442 expressed protein
          Length = 124

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 61  DDATRLHYSNAHAKQTLATLFANRNH 138
           D  T L Y+NAH  QT+ +L +++ H
Sbjct: 86  DPRTNLRYANAHVFQTVRSLSSDQVH 111


>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
           cell expansion protein COB, putative similar to
           phytochelatin synthetase GI:29570314; similar to
           GB:AAK56072; identified in Roudier, et al, Plant Phys.
           (2002) 130:538-548 (PMID:12376623); identical to cDNA
           putative phytochelatin synthetase GI:3559804; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 456

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 178 MC-LQT*WHTRKNYCDYDWQIKLQV 107
           MC ++  WH ++NY +Y W++K+ +
Sbjct: 297 MCPIRVHWHVKQNYKEY-WRVKITI 320


>At5g62770.1 68418.m07880 expressed protein
          Length = 268

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 49  NSGDDDATRLHYSNAHAK 102
           NSGDDD  RL  S +H+K
Sbjct: 154 NSGDDDLQRLSSSPSHSK 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,102,772
Number of Sequences: 28952
Number of extensions: 117778
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)