Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j23
(298 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 6e-30
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 6e-30
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 125 6e-30
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 125 6e-30
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 100 2e-22
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 78 1e-15
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 56 4e-09
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 50 3e-07
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.003
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 37 0.003
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.004
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 34 0.024
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 33 0.041
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.055
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.17
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 30 0.29
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 30 0.29
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.29
SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003) 29 0.51
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.67
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.67
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.67
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 29 0.67
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 29 0.89
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 1.6
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 28 1.6
SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025) 27 2.1
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 2.7
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.7
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 26 6.3
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 26 6.3
SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 25 8.3
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 125 bits (302), Expect = 6e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 197 IQKESTLHMVLRLRGG 244
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/61 (42%), Positives = 45/61 (73%)
Frame = +2
Query: 47 KTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 226
KT T + E ++TV +K+KI ++EG+P QRL++ ++L D++++ADYNI++ S LH+
Sbjct: 86 KTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHLF 145
Query: 227 L 229
L
Sbjct: 146 L 146
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 100 bits (240), Expect = 2e-22
Identities = 45/63 (71%), Positives = 54/63 (85%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 197 IQK 205
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 77.8 bits (183), Expect = 1e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = +2
Query: 122 VPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 244
+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 35 TLTGKTITAETE-PAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKES 211
TLTG+ I + P T+ ++K I K G P DQQRL+F G+ L D T I +
Sbjct: 77 TLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGA 136
Query: 212 TLHMVLRLRGG 244
TLH+++RL GG
Sbjct: 137 TLHLIVRLLGG 147
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 50.4 bits (115), Expect = 3e-07
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 8 SVKMXIFXKTLTGKTITAETEPAETVADLKQKI-AD--KEGVPVDQQRLIFAGKQLEDSK 178
SV M I KTL +T E ETV LKQKI AD K+ P +LI+AGK L D
Sbjct: 64 SVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDN 123
Query: 179 TMADYNIQKES 211
+ +YNI ++S
Sbjct: 124 PLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 83 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK 205
V LK +I K G+P D QRL F K+L D T+A N+++
Sbjct: 29 VFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 53 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
+T +T +ET + +EG+P ++QRLIF GK L+D K + +++
Sbjct: 3 VTVKTLDSET----RTFTVSEEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 80 TVADLKQKIADKEGVPVDQQRLIF-AGKQLEDSKTMADYNIQKESTLHM 223
TV DLK + +K G+ V RL+ GK++ D + DYNI T+ +
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.9 bits (74), Expect = 0.024
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 119 GVPVDQQRLIFAGKQLEDSKTMADYN 196
G+P ++QRLIF GK L+D K + +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 33.1 bits (72), Expect = 0.041
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 PAETVADLKQKIADKEGVPVDQQRLIFA-GKQLEDSKTMADYNIQKESTLHMVL 229
P TV DLK +I + GVP RL + G L D + ++ YN+ +T+ ++L
Sbjct: 1073 PGMTVKDLKNRIELETGVPRHLLRLRYLDGYDLTDDRRLSYYNMVPAATVQVLL 1126
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 32.7 bits (71), Expect = 0.055
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 80 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 235
TV LKQ I +EG + +Q + F G QL D+ T+ + S H+ LR+
Sbjct: 29 TVLRLKQLIEAQEGFGISEQEVHFQGNQLVDALTLGQQGVLDGS--HLDLRV 78
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 44 GKTITAETEPA-ETVADLKQKIADKEGVPVDQQ-RLIFAGKQLEDSKTMADYN 196
G T E E A E+V L IA G+PVD+Q LI G+ L+ + + +Y+
Sbjct: 10 GAMYTFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALDPNDRVCNYS 62
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 32 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKES 211
+T G T+ E +V DLK + + G+PV+ RL LEDS+ + + +++
Sbjct: 188 QTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHLQKA 247
Query: 212 T 214
T
Sbjct: 248 T 248
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 44 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK---TMADYNIQKEST 214
G+T P ++A+LK KI+ V +QRL++ +L+++K ++++ + +T
Sbjct: 65 GETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGVPPYAT 124
Query: 215 LHMVLRL 235
+ +++ L
Sbjct: 125 ISLIVVL 131
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 0.29
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 47 KTITAETEPAETVADLKQKIAD-KEGVPVDQQRLIFAGKQLEDSKTMAD-YNIQKES 211
K + + EP E V + QK+ D E VPV + +L A K D+K D +I+KES
Sbjct: 799 KALEGKEEPEEKVEE--QKVVDMNEDVPVMEDKLEEAAKVANDNKIDYDIVDIKKES 853
>SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003)
Length = 227
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 VADLKQKIADKEGVPVDQQRLIFAGKQLED-SKTMADYNIQKESTLHMVL 229
V+D++Q VP Q+LIF GK L + ++T+ I+K S + MVL
Sbjct: 116 VSDIEQAAQQVTQVPQCSQKLIFKGKSLTNRNQTLESLGIKKGSRI-MVL 164
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 29.1 bits (62), Expect = 0.67
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 68 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 217
EPA T AD + EG P +++L G L D K MA + E L
Sbjct: 1334 EPATTGADTPSESPANEGAPPAKKQLRRPGIVLSDEKKMAVKEMMMEGDL 1383
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 38 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 217
L ++ A + A + Q+I D G V + + G + D + +++ + L
Sbjct: 237 LRSPSVDATLRGQDISASVYQEIRDLGGTGVIALKPVMRGPDINDDGSHERESLRANAVL 296
Query: 218 HMVLRLRGG 244
+VLR++GG
Sbjct: 297 PLVLRMKGG 305
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 206 ESTLHMVLRLRGG 244
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 206 ESTLHMVLRLRGG 244
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 133 STKTYLCGQTIGRFQNYGRLQYSKGIYSSHGVTITRRVL 249
STKTYLC +G F+ Y L +S G T+ RV+
Sbjct: 201 STKTYLCKLCLG-FRIYTHLLAKTDFHSYFGCTVHARVV 238
>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 162 CLPAKISLC*STGTPSLSAIFC 97
CL ++S+C STG +LS + C
Sbjct: 360 CLSTRLSICQSTGRQNLSVLIC 381
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 153 AKISLC*STGTPSLSAIFCLR 91
A++S+C STG +LS + C R
Sbjct: 183 ARLSICQSTGRQNLSVLICQR 203
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 54 LPPKRNPQRRWPISSKKLPIK-KVC 125
LPP PQ +W +S K+P K K C
Sbjct: 142 LPPTDKPQFKWDVSISKIPSKLKEC 166
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 35 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 178
+L G I P AD++ +P DQ L F + LED +
Sbjct: 535 SLVGVLIRFREHPVAIAADIEAMFMQCRVIPTDQPSLRFLWRDLEDGR 582
>SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)
Length = 537
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 35 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 178
+L G I P AD++ +P++Q L F + LED +
Sbjct: 55 SLVGVLIRFREHPVAIAADIEAMFMQCRVIPIEQPSLRFLWRDLEDGR 102
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 42 RAKPLPPKRNPQRRWPISS 98
R P PPKR P+RR P +S
Sbjct: 1089 RRSPSPPKREPRRRSPSAS 1107
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 17 MXIFXKTLTGKTITAETEPAETVADLKQKI 106
M ++ +TLTG P ET+ +K KI
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKI 30
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 47 KTITAETEPAETVADLKQKIADKEGVPVDQQRLI 148
K IT E + E V K+K ++E P+D++ L+
Sbjct: 6100 KPITREEKKVEEVKPKKEKPTEREAKPLDKKPLV 6133
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 80 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK 205
T+ L+ ++ADK G P QR I K + ++++ +++
Sbjct: 57 TIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 11 VKMXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 190
V + I + K IT E E+V + I ++EG + +F+ E S MAD
Sbjct: 76 VNIDIEMRQKISKNITKEVGKKESVLNCTDSIKEREGRCTNLNSGVFSHTDDEKSAMMAD 135
Query: 191 YNIQ 202
++
Sbjct: 136 TELE 139
>SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 214 SRFLLNIVIGHSFGIFQLFARK--DKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFAR 41
S F N G+S+ IFQ+F+R+ D + + YG T +G + +GG +AR
Sbjct: 165 SAFQGNNWFGYSYAIFQIFSRRSVDGTPVQYGDT--VGFRYPYYYAYTWLYYYGGYWYAR 222
Query: 40 QC 35
C
Sbjct: 223 SC 224
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 71 PAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 247
P T+ L+ ++ + DQ+R + K LE+ T + I + LH+ R + GY
Sbjct: 78 PYMTLGTLRDQVVYPD-TEADQRRKGISDKALEEFLTQRSFPIGEYLPLHVPRRKKPGY 135
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 162 CLPAKISLC*STGTPSLSAIFC 97
C ++S+C STG +LS + C
Sbjct: 2 CRETRLSICQSTGRQNLSVLIC 23
>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 83 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNI-QKESTLHM 223
+A+ KQ++ +KE ++ +I A KQ + SK I +KES M
Sbjct: 71 IANQKQRVIEKEAETERKKAIIEAEKQSQVSKIQYQQKIMEKESMKKM 118
>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
Length = 476
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 80 TVADLKQKIADKEGV--PVDQQRLIFAGKQLEDSKTMADYNI 199
T +K IAD G PVD + AG+Q++D+ + Y +
Sbjct: 227 TATHIKVAIADCLGEIGPVDLASVALAGRQVQDTSQIRGYPV 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,155
Number of Sequences: 59808
Number of extensions: 139082
Number of successful extensions: 414
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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