Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j23
         (298 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    125   3e-31
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    31   0.007
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    26   0.26 
DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    24   1.4  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   1.8  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    22   4.2  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  125 bits (302), Expect = 3e-31
 Identities = 57/76 (75%), Positives = 67/76 (88%)
 Frame = +2

Query: 17  MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
           M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 197 IQKESTLHMVLRLRGG 244
           IQKESTLH+VLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  125 bits (302), Expect = 3e-31
 Identities = 57/76 (75%), Positives = 67/76 (88%)
 Frame = +2

Query: 17  MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
           M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 197 IQKESTLHMVLRLRGG 244
           IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  125 bits (302), Expect = 3e-31
 Identities = 57/76 (75%), Positives = 67/76 (88%)
 Frame = +2

Query: 17  MXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 196
           M IF KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 197 IQKESTLHMVLRLRGG 244
           IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 24  YSSKH*RAKPLPP-KRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIF 200
           Y + H   + +PP +RNP+RR P S  + P  +  P   +  S R  +W  P+  P +  
Sbjct: 240 YKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW--PRSRPTSKP 297

Query: 201 KR 206
           KR
Sbjct: 298 KR 299


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   SNSVKMXIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVD-QQRLIFAGKQ 163
           + +VK     +T+  + I  ETE A+   DL+ +I   EG  V+   +  F+G Q
Sbjct: 339 AGNVKSLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQ 393


>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 211 RFLLNIVIGHSFGIFQLFARKDKSLLIYG 125
           RFL N+ +G  F + +L  R    LL YG
Sbjct: 99  RFLGNLCLGKDFTLEELRERYHAVLLTYG 127


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 107 ADKEGVPVDQQRLIFAGKQLEDSKTM 184
           A  E  PVD   L+   K +ED KT+
Sbjct: 166 AQAEDYPVDLYYLMDLSKSMEDDKTI 191


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 42  RAKPLPPKRNPQRRWPISSKKL-PIKKVC 125
           R  P+PP ++ QRR   SS +    + VC
Sbjct: 63  RMPPVPPPKHSQRRRRSSSPRTRQFRSVC 91


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,824
Number of Sequences: 2352
Number of extensions: 4498
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 18688617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)