Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j22
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   3.4  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   5.9  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.9  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   7.8  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 53 CIYCLKLKIVCDKGR 97
          C+YC + KI CDK R
Sbjct: 26 CLYCRRRKIKCDKNR 40


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 330 TLFLLQMQMPTKITRSRIAPMIAPTPNHVATIL 428
           TL++LQ   PT+ITR  I   +  T    A +L
Sbjct: 128 TLWVLQPLKPTRITRQEIGQQLTETLGFGAQLL 160


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 410 IRRGGDHGGYPAPRDFRWHLHLQ 342
           IRRGG     P PRDF   L  Q
Sbjct: 87  IRRGGAKSHGPKPRDFSTKLQTQ 109


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -1

Query: 382 ILLLVIFVGICICSRNNVVFATLL 311
           ++++ +F G+C+ +    VF+TL+
Sbjct: 303 VIMITLFTGVCMITNGIGVFSTLI 326


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 128 LVTNIEFRILIFLYHKQFSILNN 60
           L+T ++++IL+  YHK  S   N
Sbjct: 352 LITWLKYKILLIYYHKSSSTYKN 374


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 108 KFDIGD*PIVLNTPEIYPSLY 170
           KF I D PI+   P IYP  Y
Sbjct: 2   KFYIDDLPILFPYPRIYPEQY 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,740
Number of Sequences: 5004
Number of extensions: 33876
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)