Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j22
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    28   3.0  

>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 93  ED*NSKFDIGD*PIVLNTPEIYPSLYLAAQRFLIFFLLGLTKWRARFCENF 245
           +D NSK+DI   P ++   ++YP      QRF++ +L    +++    + F
Sbjct: 294 DDSNSKWDILQ-PFLIGDQQVYPLSLATYQRFILQYLAACGEYQDLLLQTF 343


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 93  ED*NSKFDIGD*PIVLNTPEIYPSLYLAAQRFLIFFLLGLTKWRARFCENF 245
           +D NSK+DI   P ++   ++YP      QRF++ +L    +++    + F
Sbjct: 294 DDSNSKWDILQ-PFLIGDQQVYPLSLATYQRFILQYLAACGEYQDLLLQTF 343


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 171 LAAQRFLIFFLLGLTKWRARFCENFANYCMLLVLNC 278
           LAAQR L+FF     K  ARF +  A +   L L C
Sbjct: 130 LAAQRLLVFFFPHTEKQVARFQKLMAKHIWYLYLVC 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,825
Number of Sequences: 27780
Number of extensions: 190045
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)