Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j22
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
          variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 11 RFRFECE*RAPAS 49
          RFR+ECE R+  S
Sbjct: 59 RFRYECEGRSAGS 71


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein
          protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 11 RFRFECE*RAPAS 49
          RFR+ECE R+  S
Sbjct: 59 RFRYECEGRSAGS 71


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 113 RYW*LTHSFKYP 148
           RYW +T  F YP
Sbjct: 144 RYWAITDPFTYP 155


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 148 LRSTPHYIWLPNV 186
           LR  PH +W P+V
Sbjct: 98  LRIPPHRLWKPDV 110


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 144 YLKLWVSHQYRI 109
           YL +WV  +YR+
Sbjct: 128 YLNIWVPQKYRL 139


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 144 YLKLWVSHQYRI 109
           YL +WV  +YR+
Sbjct: 128 YLNIWVPQKYRL 139


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 397 AIMGAILLLVIFVGICICSRNNVVFATL 314
           AI   +  L +++G C    N +++ATL
Sbjct: 403 AIPAFLSSLFLWLGYCNSLLNPIIYATL 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,264
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)