Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j18
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   1.3  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   5.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    22   9.3  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 78   VVDSVKLYFARANVSKVLSSCAQ 10
            +++ +KL++ R N++KV+ +C Q
Sbjct: 1328 MMEHLKLFWGRLNMAKVIRACDQ 1350


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   RVHWAQLERTLLTFARAKYSFTEST 76
           ++ W  L   + + ARA+ SF +ST
Sbjct: 324 KISWITLAHVVYSNARAQNSFVDST 348


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 109 DLLNELLLQFRSRFSEAILCSGK 41
           DL N+LLL F + FS+ I  S +
Sbjct: 155 DLDNKLLLDFVNLFSQTITDSSR 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,008
Number of Sequences: 5004
Number of extensions: 2562
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)