Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j15
         (153 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    20   2.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   3.4  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   6.0  

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 65  RLLWSLRKILIP 100
           R +WS  K+LIP
Sbjct: 231 RTIWSKSKLLIP 242


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 3.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 84 RRLQRSRKKHGENLPTGGRSRRKGEK 7
          R L+ S ++HG    +  +  R GEK
Sbjct: 17 RGLKYSGQQHGPQSDSRNQQLRTGEK 42


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory
          receptor candidate 5 protein.
          Length = 522

 Score = 18.6 bits (36), Expect = 6.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 35 PVGRFSPCFFRLLWSL 82
          P G FSP  + LLW L
Sbjct: 25 PTG-FSPKGYSLLWIL 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,624
Number of Sequences: 336
Number of extensions: 477
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 31
effective length of database: 112,169
effective search space used:  2131211
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)