Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j15
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0160 - 20794974-20795977,20796241-20796295                       25   6.3  
06_02_0011 - 10569471-10572245                                         25   8.3  
06_01_0139 - 1061630-1062226,1062318-1062449,1062945-1063934,106...    25   8.3  
06_01_0127 - 977667-978719,978875-979051                               25   8.3  

>11_06_0160 - 20794974-20795977,20796241-20796295
          Length = 352

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 99  GIKILRRLQRSRKKHGENLPTGGRSRR 19
           G  +LRR + SR++HG  L  G  +R+
Sbjct: 166 GGALLRRAESSRRQHGRALREGREARQ 192


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 62 FRLLWSLRKILI 97
          F+LLWSLRK LI
Sbjct: 15 FKLLWSLRKYLI 26


>06_01_0139 -
           1061630-1062226,1062318-1062449,1062945-1063934,
           1064041-1064211
          Length = 629

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 10  LSLPPRSTASW*ILAMFLPTPLEST*NLNPLFFTVL 117
           L +PP+  A   ++  F+ TPL S+ ++ P F+ VL
Sbjct: 456 LGVPPQRAA---LVPTFVSTPLLSSSSMPPTFYRVL 488


>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 7   LLSLPPRSTASW*ILAMFLPTPLEST*NLNPLFFTVL 117
           +  +PP+  A   ++  F+ TPL S+  ++P F+ VL
Sbjct: 235 MFGVPPQRAA---LVPTFVSTPLLSSSTMSPTFYRVL 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,125,930
Number of Sequences: 37544
Number of extensions: 58638
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)