Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j15
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)                   25   9.7  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      25   9.7  

>SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 119 PKTV---KNKGLRFYVDSKGVGRNMARI 45
           PKT+   KNKGL   ++SKG+G    R+
Sbjct: 173 PKTLDLLKNKGLTLNMESKGIGPTEYRV 200


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 93  KILRRLQRSRKKHGENLPTGGRSRRKG-EKL 4
           K LR+ Q ++ K  +  P GGRS R   EKL
Sbjct: 713 KALRKAQETKGKLADGKPVGGRSGRPAIEKL 743


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 23  RDLPPVGRFSPCFFRLLWSLRKILIPYSSQ 112
           RDLPP+  F+P    +  +L  ILIP  +Q
Sbjct: 360 RDLPPLFNFTPQELSVKPALNTILIPPHAQ 389


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 114  NCEE*GIKILRRLQRSRKKHGENLPTGGRSRRKGEKL 4
            NCE    ++  ++ R RK H  N    GR  + G K+
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKI 1341


>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 93  KILRRLQRSRKKHGENLPTGGRSRR 19
           K LR+ Q ++ K  +  P GGRS R
Sbjct: 444 KALRKAQETKGKLADGKPVGGRSGR 468


>SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)
          Length = 629

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 93  KILRRLQRSRKKHGENLPTGGRSRR 19
           K LR +Q  R K  +  P GGRS R
Sbjct: 380 KALRTVQEKRGKLPDGKPVGGRSGR 404


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 32   PPVGRFSPCFFRLLWSLRK 88
            P VG+F   FFR  WSL K
Sbjct: 1134 PQVGQFFRRFFRPKWSLEK 1152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,531,567
Number of Sequences: 59808
Number of extensions: 59107
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 16,821,457
effective HSP length: 30
effective length of database: 15,027,217
effective search space used: 300544340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)