Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j15
         (153 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           21   5.2  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    21   6.8  

>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 87  LRRLQRSRKKHGENLPTGGRSRRKG 13
           +RR  R+ ++H     +GG+ R  G
Sbjct: 171 VRRAPRAERRHPYTRRSGGQQRSAG 195


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 78  LQRSRKKHGENLPTGGRSRRKGEKL 4
           +Q  +++HG  LP   +++   EK+
Sbjct: 638 IQPKQQQHGTGLPLRTQNKTDAEKI 662


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,489
Number of Sequences: 2352
Number of extensions: 1771
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 563,979
effective HSP length: 30
effective length of database: 493,419
effective search space used:  9868380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)