Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j14
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 204 6e-54
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 204 6e-54
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 38 0.001
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 2.9
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 6.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 204 bits (498), Expect = 6e-54
Identities = 93/147 (63%), Positives = 118/147 (80%)
Frame = +3
Query: 9 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 188
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 189 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 368
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 369 DVEIGDIVTIGECRPLSKTVRFNVLKV 449
+ GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 204 bits (498), Expect = 6e-54
Identities = 93/147 (63%), Positives = 118/147 (80%)
Frame = +3
Query: 9 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 188
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 189 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 368
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 369 DVEIGDIVTIGECRPLSKTVRFNVLKV 449
+ GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 237 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 416
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 417 SKTVRFNVLKV 449
S T RF ++K+
Sbjct: 64 SATKRFEIIKI 74
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 148 LKPRPTSLWYLNGFLLRFTP 89
L P+PT+ W NGF + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 94 TPIPFLRFRKTVGCFWKER 38
T F++ R TV CFW+E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 372 VEIGDIVTIGECRPLSKTVRFNVL 443
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 143 TEAHILVVSQRFSAPLHTNTFLAVQKDCRLFLERAFRLIRHF 18
T H+LV+ + L N FLA+ L E+A L+R F
Sbjct: 1053 TLCHLLVIHDSRTVGLVVNAFLAITP--LLVSEQAHSLVREF 1092
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 90 GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 188
G+K + +P Y VGLG K + I T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,045
Number of Sequences: 5004
Number of extensions: 38936
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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