Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j12
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 81 6e-16
02_05_1014 + 33510108-33510471,33510857-33511362 53 2e-07
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 1.9
07_03_1532 - 27519701-27520831 29 3.3
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354... 29 3.3
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846... 29 3.3
01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845 29 3.3
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 29 4.3
04_04_1575 + 34548774-34549109,34549979-34550185 28 5.7
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 81.4 bits (192), Expect = 6e-16
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Frame = +3
Query: 144 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 296
W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 297 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 476
SKS +R++W KFGD+ + G + E V + +++ P D L S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130
Query: 477 SNVIFKCRTC--QGDHLTLYCPFK 542
V+ CRTC +GDH T CP+K
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYK 154
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = +3
Query: 183 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 344
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A+R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 345 ASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 524
A + T E++ ++ + +D + L ++ ++ + +G H T
Sbjct: 96 AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153
Query: 525 LYCPFK 542
CP K
Sbjct: 154 SKCPNK 159
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 111 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 287
D + E +A+WA Q VL P + LK D +V + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754
Query: 288 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 374
R + KS K T + F +S P NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783
>07_03_1532 - 27519701-27520831
Length = 376
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 545 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 441
+LKW + Q + T ++ A WW K PVI
Sbjct: 240 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 274
>07_01_1218 -
11633829-11634628,11634713-11635050,11635349-11635445,
11635482-11635725,11636114-11636122
Length = 495
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 545 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 441
+LKW + Q + T ++ A WW K PVI
Sbjct: 332 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 366
>05_04_0308 -
20081366-20082404,20082702-20083078,20084293-20084679,
20085038-20086000
Length = 921
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 545 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 441
+LKW + Q + T ++ A WW K PVI
Sbjct: 817 ILKWDLNIQRMEFPATLKRNYYARWWDKFTITPVI 851
>01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845
Length = 381
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 545 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 441
+LKW + Q + T ++ A WW K PVI
Sbjct: 342 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 376
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 545 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 441
+LKW + Q + T ++ A WW K P+I
Sbjct: 722 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPII 756
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 111 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 281
D+PV +F A W + V+ +E E LKIV K D+D +++ YK+
Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,424
Number of Sequences: 37544
Number of extensions: 291331
Number of successful extensions: 858
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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