Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j12
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)                 59   6e-16
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)              31   1.1  
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)                 30   1.9  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               29   4.4  
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)               29   4.4  
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)               29   4.4  
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)                   28   5.8  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                28   5.8  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   7.7  
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                28   7.7  

>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
          Length = 304

 Score = 59.3 bits (137), Expect(2) = 6e-16
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = +3

Query: 162 IDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 320
           + +  +PP SEV E   KIVTEYK D++ K  KI+ TY++E R V+K IAKRK
Sbjct: 71  LSESQIPPSSEVREGENKIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123



 Score = 42.3 bits (95), Expect(2) = 6e-16
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 417 SKEESQR--PDDGELDGLKPPSSNVIFKCRTCQGDHLTLYCPFK 542
           +KE ++R  PD  E D LK  S   I +CR C+GDH T  CP+K
Sbjct: 116 AKEIAKRKNPDATEEDPLKKLSGQKIVQCRICKGDHWTTKCPYK 159


>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
          Length = 297

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 282 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 461
           E+ + +KS  + K+ S  GDS S  P P+ +   + ++V  Q ++  ++     D E  G
Sbjct: 74  EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133


>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
          Length = 159

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 444 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 551
           DG+  G   KPP S  + KC  C G H    C F  ++
Sbjct: 100 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 137


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 444  DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 551
            DG+  G   KPP S  + KC  C G H    C F  ++
Sbjct: 1230 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267


>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +3

Query: 249 KKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 419
           K  +++R Y+IEK    +S+AK      W KF +       PNP  T   +D    F   
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612

Query: 420 KEESQRPDD 446
             +S   +D
Sbjct: 613 NNDSIEVND 621


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 174 VLPPPSEVVENGLKI-VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS 350
           ++   S+ +EN  KI + E   +N+N  +++   Y    R   K  +++KT S+   + +
Sbjct: 464 IIDESSKNIENRNKIELLEDAAENENSGIRVYNAYSALCRKEKKPQSEKKTPSETKSALT 523

Query: 351 DKPGPNPATT 380
               P+P  T
Sbjct: 524 SSKKPSPLAT 533


>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 276 KIEKRV-VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS----KEESQRP 440
           K  KR  +  S   +KT ++  D  +DK  P+P+    + D  +  I      KE++++ 
Sbjct: 229 KTSKRPRIGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLNMKEKTEKS 288

Query: 441 DDGELDGLKPPSSNVIFK 494
            D +L  L    +N+IFK
Sbjct: 289 VDAQLADL---VNNLIFK 303


>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
          Length = 425

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 225 EYKYDNDNKKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAED 395
           +Y YD +  +   +   KIEK+   +S+AK      W KFG+       PNP  T   +D
Sbjct: 304 QYIYDYERHQGVCMDPSKIEKKPGLRSVAKMGLNCMWGKFGEQ------PNPQRTEYVDD 357


>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
          Length = 415

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 252 KVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 386
           K  I+R Y+    ++  +  KR  W +FG +   K GP    +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 213 LVHFQPLQKVVEVHLGQSRPHQPRKPEILQQQACRNIYFKQQLL 82
           L HF+   K VEV LG      P   E+LQ     ++  K++LL
Sbjct: 125 LRHFKKNPKAVEVILGSKHKTDPVHQELLQFMTQLSMVMKERLL 168


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 165 DQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA-KRKTWSKFGD 341
           D G   P    V NG   VT+   D++ K    V T     +    S+  K+ T S    
Sbjct: 717 DAGSASPMGFYVPNGPWGVTKNGGDSNKKAENAVNTTSKATKSEHSSVGIKKVTKSHNNK 776

Query: 342 SASDKPGPNPATTN 383
            +SDK GP    TN
Sbjct: 777 ESSDKYGPGAEQTN 790


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 189 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSK 332
           S++++N   I+  Y+ +N + K+K +RT KI +   S+     K W +
Sbjct: 44  SKILQNKETILASYENNNGHIKIKRIRTGKIYR--TSRYFDNDKAWMR 89


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 155 LISPGSLKFFSNRHV-ETYILN-NNCYFAIYRMK**LIGRFDQ 33
           LI P  L F S + + + Y    NNC+  ++R K  L+GR D+
Sbjct: 179 LIFPYFLSFASGKKILQRYAAEFNNCFMDLHRQKLGLVGRRDE 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,948
Number of Sequences: 59808
Number of extensions: 348609
Number of successful extensions: 1019
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)