Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j11
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        212   1e-55
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)                28   5.8  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   5.8  
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              27   7.6  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  212 bits (518), Expect = 1e-55
 Identities = 98/116 (84%), Positives = 109/116 (93%)
 Frame = +3

Query: 132 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 311
           W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79

Query: 312 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 479
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 213 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 341
           V L D HG + +   + + + RI++AM      PED   L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 296 THCLHDTEDLFASYESYLGNSM*IPQHYTNL*G-SETLLSKFVNLF 162
           T+    T  L A+Y +    +  +P +YTNL   + T L+ + NLF
Sbjct: 160 TNLFAPTHSLLANYTNLFAPTHSLPANYTNLFAPTHTTLANYTNLF 205


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 90  ISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 263
           +S   LP +RS+  + +L +D    ++    K       + V+  + D  G A    + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804

Query: 264 KKILRIMKAMGLAPD 308
           KKIL+ + AMG  P+
Sbjct: 805 KKILQRLVAMGKKPE 819


>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
          Length = 733

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 280 IRRIFLPVTNLTWATPCESLSITPI 206
           +RRI LP+TN  + T  E+L +T +
Sbjct: 683 VRRIILPLTNRIYLTGSEALKVTQL 707


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 174 KLGKKGLTPSQIGVMLRD 227
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 20  CRCQIGDLVKSRKHGSYARSW*GYLP 97
           CR +IG + KS KHGSY+ S  G+ P
Sbjct: 77  CRSRIG-IQKSTKHGSYSLSIPGHDP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,363,405
Number of Sequences: 59808
Number of extensions: 339851
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)