Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j11
(550 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50479-1|AAA93478.1| 151|Anopheles gambiae protein ( Anopheles ... 281 1e-77
AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein. 25 1.6
AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein. 25 1.6
AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein. 25 1.6
AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein. 25 1.6
AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein. 25 1.6
AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein prot... 25 1.6
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 23 5.0
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 23 5.0
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel... 23 6.6
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 23 6.6
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein. 23 8.8
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein. 23 8.8
AJ439060-9|CAD27760.1| 348|Anopheles gambiae putative translati... 23 8.8
>U50479-1|AAA93478.1| 151|Anopheles gambiae protein ( Anopheles
gambiae putativeribosomal protein S13 mRNA, complete
cds. ).
Length = 151
Score = 281 bits (688), Expect = 1e-77
Identities = 130/151 (86%), Positives = 145/151 (96%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMHAPGKGIS+SALPYRRSVP+WLKL+A+DVKEQI KLGKKG+TPSQIG++LRDSHGV
Sbjct: 1 MGRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGV 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
AQVRFV G K+LRIMKA+GL PD+PEDLY+LIKKAV++RKHLERNRKD DSKFRLIL+ES
Sbjct: 61 AQVRFVNGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIES 120
Query: 420 RIHRLARYYKTKSVLPPNWKYESSTASALVA 512
RIHRLARYYK K+VLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKIKAVLPPNWKYESSTASALVA 151
>AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 142 TTPSQWTDPTITTTTPIWTDPTTWSAPTTTTTWSDQPP 179
>AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 142 TTPSQWTDPTITTTTPIWTDPTTWSAPTTTTTWSDQPP 179
>AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 142 TTPSQWTDPTITTTTPIWTDPTTWSAPTTTTTWSDQPP 179
>AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 141 TTPSQWTDPTITTTTPVWTDPTTWSAPTTTTTWSDQPP 178
>AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 141 TTPSQWTDPTITTTTPVWTDPTTWSAPTTTTTWSDQPP 178
>AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein
protein.
Length = 373
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = +2
Query: 164 TNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 277
T W + + + T + TWS P+ W PP
Sbjct: 142 TTPSQWTDPTITTTTPVWTDPTTWSAPTTTTTWSDQPP 179
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 23.4 bits (48), Expect = 5.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 234 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 341
G++ V+F+T ++ I +MG+ L D Y+ ++
Sbjct: 443 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 478
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 23.4 bits (48), Expect = 5.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 234 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 341
G++ V+F+T ++ I +MG+ L D Y+ ++
Sbjct: 444 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 479
>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
cytoskeletal structural protein protein.
Length = 1645
Score = 23.0 bits (47), Expect = 6.6
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +2
Query: 113 PPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRN 259
PP P ++ID C +L+ ++ ++T + WS S N
Sbjct: 590 PPDVPNRIDIDVTGCSAVSLRLYEPLEGAITTKFKVQ---WSSRSDFSN 635
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 23.0 bits (47), Expect = 6.6
Identities = 9/55 (16%), Positives = 29/55 (52%)
Frame = +3
Query: 69 MHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 233
++ GK ++ + + + + A +++ +YK G+ G+T + + ++ +S+
Sbjct: 33 LNGTGKSNILDSICFVLGISNLVHVRATSLQDLVYKSGQAGITKATVTLIFDNSN 87
>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
Length = 3361
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 99 TGRYPYQERAYDPCLRLF 46
TG Y Y+ R YDP + F
Sbjct: 2679 TGLYNYRARLYDPDIGRF 2696
>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
Length = 3398
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 99 TGRYPYQERAYDPCLRLF 46
TG Y Y+ R YDP + F
Sbjct: 2689 TGLYNYRARLYDPDIGRF 2706
>AJ439060-9|CAD27760.1| 348|Anopheles gambiae putative translation
initiation factor protein.
Length = 348
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 135 LKLTADDVKEQIYKL 179
LKL ADDVK Q+ L
Sbjct: 95 LKLAADDVKGQVESL 109
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,522
Number of Sequences: 2352
Number of extensions: 10503
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -