Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j06
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 29 1.6
03_01_0298 + 2318836-2319051,2321238-2323106 29 2.1
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 28 3.7
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 28 4.9
04_04_0463 - 25397837-25399693,25402136-25402405 28 4.9
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 27 6.5
03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881... 27 6.5
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 6.5
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 8.6
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 27 8.6
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 241 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSFLSTTYTSPVKR 95
+KS +SD+LS S +K+ G + + TC TKK+ SF T PV R
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF--NTAKRPVGR 318
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
A H F HF C SSN NYVC + + WK+L
Sbjct: 92 AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 240 LNREGISTQTNFRNHLLLKDMQ 175
+NREGIS N N LLLK +Q
Sbjct: 77 INREGISYYNNLINELLLKGVQ 98
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 141 KLFRSYQQHTRRPSNGPAANSAGTRAGW 58
+L +Q+ P GPA NS+G AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
A H+F HF C SSN NY C I + WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 339 HRCAVRKLFKQANSKH-VFDHFGCSSNYCFN 428
H C +RKL K S+H + + S +CFN
Sbjct: 637 HPCRLRKLLKSVASRHGLISGWKFSGKHCFN 667
>03_06_0629 +
35187318-35187320,35187424-35187534,35188089-35188191,
35188357-35188416,35188502-35188661,35188755-35188872
Length = 184
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 372 ANSKHVFDHFGCSSNYCF 425
AN VFD C+S YCF
Sbjct: 105 ANLNRVFDQTACTSKYCF 122
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
A H+F HF C SS+ NYVC + + WK++
Sbjct: 12 AECSHMF-HFHCISSSVKHGNYVCPVCRAKWKEI 44
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 39 ETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHV 158
ETI HPN +++ +PPV G + F+ HV
Sbjct: 1030 ETIPAHPNFMLFATQNPPVLYGGRKILSRAFRNRFIEVHV 1069
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 238 KSRRDFNSDELS*SPLIKRYAGTVFENTCLTKKTFSFLSTTYTSPVKRTGGELCRYTSR 62
K+RR F DE + P +RY GT++ T + + +T +P G C + R
Sbjct: 346 KARRLFQDDEKAAPPSAERYVGTLY--TKVGDEVLHKYTTPTATPSTTKGDCFCNWGVR 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,591
Number of Sequences: 37544
Number of extensions: 205190
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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