Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j05
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    58   9e-10
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.9  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   5.8  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 35/94 (37%), Positives = 51/94 (54%)
 Frame = +1

Query: 277 VQLSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFK 456
           V  SK+LS +LRH A   GLQI  +GYI VD +L+        +  +  +V  N+K+RF 
Sbjct: 35  VHYSKALSKVLRHTAKANGLQIREDGYIEVDSILKLPQFRGMGMELLLSIVKGNDKKRFT 94

Query: 457 LRFHTETKALEIKANQGHSIQLSNIELKLITXSS 558
           +        L I+ANQGHSI+   + +  I  +S
Sbjct: 95  M--EEVEGVLYIRANQGHSIKAVQVPMARIDNAS 126


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172  VKSWIPSVTYFWNLITACSIS 234
            + +W+P   YFW  +TA  IS
Sbjct: 1343 ITAWLPHYIYFWITLTALCIS 1363


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 SVFNIA*LFMSLN-LQVQKRRTAKQIFILASEARCCERRTA 338
           S FNI+ +   L+ L  + R+  + ++   SEA C ER+ A
Sbjct: 41  SAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSERKLA 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,402
Number of Sequences: 5004
Number of extensions: 44282
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)