Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j05
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    43   1e-04
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197...    31   0.63 
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839     27   7.8  

>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
 Frame = +1

Query: 283 LSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHK-------SLCKFSVADVERVVATNE 441
           L + L+ +LRH A +  L++  +GY+RV +LL+          L   +V +++  V  + 
Sbjct: 82  LGRLLTRILRHMASELNLEMRTDGYVRVRDLLKLNLQTFAKIPLKSHTVDEIKEAVRRDN 141

Query: 442 KQRFKLRFHTETKALEIKANQGHSI 516
           KQRF L    E   L I+ANQGH++
Sbjct: 142 KQRFGLL--EEDGELLIRANQGHTV 164


>06_01_0267 -
           1972988-1973148,1973275-1973403,1973881-1974024,
           1974368-1974493,1974595-1974720,1975149-1975241,
           1975465-1975606,1976747-1976878,1976943-1977080,
           1977431-1977523,1978186-1978389,1978568-1978656,
           1978839-1978988,1979088-1979253,1979355-1979576,
           1979687-1979872,1980289-1980411,1980511-1980611,
           1982005-1982155
          Length = 891

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +1

Query: 340 ISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFKL-----RFHTETKALEIKANQ 504
           +  E  +++ E   +KSLC+    ++++++A NE+QR        R   E +    +A +
Sbjct: 398 MKVENMVKLKEEFDYKSLCRRLDIELDKLIAENERQRKYFDDEIERITAEAQLRVTEAER 457

Query: 505 GHSIQLSNIELK 540
            + I L N + K
Sbjct: 458 EYKISLENEKAK 469


>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
          Length = 626

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 277 VQLSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHKSLCKFSVADVERVVA 432
           V L  ++SW + +G    GL +S   ++    L +HK      +A + RVVA
Sbjct: 230 VYLQDNVSWTVGYGIPTLGLMVSVAVFLSGTPLYRHKVPQGSPLATMGRVVA 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,775
Number of Sequences: 37544
Number of extensions: 229678
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)