Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j05
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              30   1.1  
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)                      29   2.0  
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  

>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 311 LRSQDKDLLSCTSFLHL*IKTHKQLSDIEHAVIKFQKYVTDGIQLFTKKVFGLIVMYYCK 132
           +RSQ+   + C+S++     T + L      +  F  YV  G  L   KVF +I ++Y  
Sbjct: 27  IRSQEVGAIRCSSYIGSLNATFRALCPAITGIAMFVPYVLTGNTLTPGKVFTVIGLFYSI 86

Query: 131 R 129
           R
Sbjct: 87  R 87


>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
          Length = 559

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 102 QNKCPSVFLTFTIIHYYQTKHFFCKKLD 185
           Q+  P  +LT+  ++ + + HFFC +LD
Sbjct: 172 QSYTPVAYLTYLTLNVHMSYHFFCAELD 199


>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 265 CKKDVQLSKSLSWLLRHGAVK---EGLQISAEGYIRVDELLQHKSLCKFSVADV 417
           C+  +++ K +  ++ +  +K   EGLQ S + ++ V+   +  ++CK   A V
Sbjct: 584 CRNPIEIEKLMEKIIANNVLKVMEEGLQFSYQAHLAVEGAAKKAAVCKNKGASV 637


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,006
Number of Sequences: 59808
Number of extensions: 298158
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)