Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j05
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2' phosph...    93   6e-19
BC005133-1|AAH05133.1|  204|Homo sapiens tRNA phosphotransferase...    61   2e-09
AC004908-3|AAD05197.1|  430|Homo sapiens WUGSC:H_DJ0855D21.3 pro...    30   6.5  
BC029590-1|AAH29590.1|  416|Homo sapiens SEMA3D protein protein.       29   8.5  
BC026190-1|AAH26190.2|  504|Homo sapiens zinc finger protein 596...    29   8.5  
AY358937-1|AAQ89296.1|  777|Homo sapiens Collapsin-2 protein.          29   8.5  
AK093442-1|BAC04166.1|  139|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2'
           phosphotransferase 1 protein.
          Length = 253

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = +1

Query: 271 KDVQLSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQR 450
           +DVQLSK+LS+ LRHGA+K GL + A+G++ +  LLQ      FS  DV+RVV TN KQR
Sbjct: 27  RDVQLSKALSYALRHGALKLGLPMGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQR 86

Query: 451 FKLRFHTETKALEIKANQGHSIQLSNIEL 537
           F L+    +  L I+ANQGHS+Q+  +EL
Sbjct: 87  FALQLGDPSTGLLIRANQGHSLQVPKLEL 115


>BC005133-1|AAH05133.1|  204|Homo sapiens tRNA phosphotransferase 1
           protein.
          Length = 204

 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +1

Query: 340 ISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFKLRFHTETKALEIKANQGHSIQ 519
           + A+G++ +  LLQ      FS  DV+RVV TN KQRF L+    +  L I+ANQGHS+Q
Sbjct: 1   MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60

Query: 520 LSNIEL 537
           +  +EL
Sbjct: 61  VPKLEL 66


>AC004908-3|AAD05197.1|  430|Homo sapiens WUGSC:H_DJ0855D21.3
           protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 93  SI*QNKCPSVFLTFTIIHYYQTKHFFCKKLDTISYIFLEFN 215
           SI ++    + LT  +I Y +TKHF  KK   I   +L FN
Sbjct: 41  SIGEDFTQHIALTQNVITYMRTKHFVSKKFGKIFSDWLSFN 81


>BC029590-1|AAH29590.1|  416|Homo sapiens SEMA3D protein protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 146 MYYCKRKKHTW--TFILLNR*ICQNEIRNN*QRMQ 48
           MYYCK ++HT+  T + L   + +NE   N QR +
Sbjct: 301 MYYCKAQEHTFIHTIVKLTLNVIENEQMENTQRAE 335


>BC026190-1|AAH26190.2|  504|Homo sapiens zinc finger protein 596
           protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 VFLTFTIIHYYQTKHFFCKKLDTISYIFLEFN 215
           + LT  +I Y +TKHF  KK   I   +L FN
Sbjct: 124 IALTQNVITYMRTKHFVSKKFGKIFSDWLSFN 155


>AY358937-1|AAQ89296.1|  777|Homo sapiens Collapsin-2 protein.
          Length = 777

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 146 MYYCKRKKHTW--TFILLNR*ICQNEIRNN*QRMQ 48
           MYYCK ++HT+  T + L   + +NE   N QR +
Sbjct: 662 MYYCKAQEHTFIHTIVKLTLNVIENEQMENTQRAE 696


>AK093442-1|BAC04166.1|  139|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36123 fis, clone TESTI2022874, weakly similar to
           ZINC FINGER PROTEIN 135. ).
          Length = 139

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 VFLTFTIIHYYQTKHFFCKKLDTISYIFLEFN 215
           + LT  +I Y +TKHF  KK   I   +L FN
Sbjct: 23  IALTQNVITYMRTKHFVSKKFGKIFSDWLSFN 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,937,626
Number of Sequences: 237096
Number of extensions: 1351866
Number of successful extensions: 2381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2381
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)