Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j05
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical ...    32   0.25 
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    30   1.3  
U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    29   3.1  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    28   5.3  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL132904-1|CAC35832.2|  385|Caenorhabditis elegans Hypothetical ...    27   9.3  
AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.3 protein.
          Length = 326

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = -2

Query: 479 FVSV*NLSLNRCFSFVATTRSTSATLNLHSDLCCNSSSTLM*PSALICSPSFTAPCLRSQ 300
           FV +  L++ +  S + ++ S S TL +H       +  +  P   IC PSF +  +   
Sbjct: 208 FVVLIRLNMKKALSGIRSSVS-SKTLKMHKTFMTTLNIQVAVPIVFICIPSFASIAIPLI 266

Query: 299 DKDLLSCTSFLHL*IKTHKQLSDI 228
           + D     + +++ + TH  LS +
Sbjct: 267 NADNQGTNNLIYITLSTHGALSTL 290


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/105 (20%), Positives = 43/105 (40%)
 Frame = -2

Query: 542 NFNSILDSCILCP*FALISNAFVSV*NLSLNRCFSFVATTRSTSATLNLHSDLCCNSSST 363
           NF  I    +    F      F  +  L++ +  S + ++ S   T  +H +   + +  
Sbjct: 188 NFRMIYRQLLFTALFLSELIVFTVLIRLNMQKAISEIRSSASCK-TFKIHRNFMKSLNMQ 246

Query: 362 LM*PSALICSPSFTAPCLRSQDKDLLSCTSFLHL*IKTHKQLSDI 228
           +  P  +IC PSF    +     +     +F+++ + TH  LS +
Sbjct: 247 IAVPIVVICIPSFFGLAVPFLQGNTQGAINFIYIIVSTHGALSTL 291


>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 334 VLLSQHRASEAKIKICLAVRLFCTC 260
           ++L+QH +S     IC+   LFCTC
Sbjct: 287 MMLNQHLSSFTDFLICMPFILFCTC 311


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 94  LFSKINVQVCFLRLQ*YITIKPNTFFVKSWIPSVTYFWNLITACSISLSCL 246
           +F   N +  F ++Q    I+ +   VK  + S+  F N    CSI L C+
Sbjct: 319 IFLLRNFETLFYKIQEISKIESSFSLVKEILKSIEVFSNDSIICSIGLKCI 369


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 382 HKSLCKFSVADVERVVATNEKQRFKLRFHTETKALEIKANQGHSIQLSNIELKLITXSS 558
           + S C  S + V+  V  NE++R +     + K   ++ N   SIQ S ++  L+  S+
Sbjct: 554 NSSACMNSHSSVD--VGYNEQERRQFEQALDEKKANVETNDDRSIQFSRVDTGLLKDSN 610


>AL132904-1|CAC35832.2|  385|Caenorhabditis elegans Hypothetical
           protein Y111B2A.1 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 322 VKEGLQISA-EGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFKLRFHTETKALEIKA 498
           VK G   S  EGY+R+  L++ +    FSV D  +    N++  F +    E  A  + A
Sbjct: 115 VKSGKMASVPEGYLRIAILMELRGKSLFSVMDSTKSEVPNKEISFPIATIREIGAQILSA 174

Query: 499 -NQGHSIQLSNIELK 540
             +   +++ +++LK
Sbjct: 175 MKKLEKMEIVHLDLK 189


>AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical
           protein Y47A7.2 protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 258 LQVQKRRTAKQIFILASEARCCE---RRTANKCGRLHK 362
           ++ QKRR+ K+   L + AR C    RR  ++C RL K
Sbjct: 121 IEPQKRRSKKEKNSLKAAARTCNKEARRLKSQCARLAK 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,562
Number of Sequences: 27780
Number of extensions: 243657
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)