Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19j03
         (944 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               150   1e-36
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                72   8e-13
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   2e-06
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         34   0.19 
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)                     31   1.0  
SB_12293| Best HMM Match : OATP (HMM E-Value=0)                        29   4.1  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  150 bits (364), Expect = 1e-36
 Identities = 67/126 (53%), Positives = 89/126 (70%)
 Frame = +3

Query: 81  RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGN 260
           +P KI+G +  L  G HGFH+H YGD +NGC SAG HFNP  ++HG P  E RHVGDLGN
Sbjct: 26  KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85

Query: 261 IKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLG 440
           + + G +    I+M D +++L G H+++GRS+VVH D+DDLG   H  SKTTG++ GRL 
Sbjct: 86  VVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLA 144

Query: 441 CGIIAI 458
           CG+I I
Sbjct: 145 CGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 71.7 bits (168), Expect = 8e-13
 Identities = 37/72 (51%), Positives = 47/72 (65%)
 Frame = +3

Query: 240 HVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTG 419
           HVGDLGNI +   N        D  + ++   +IIGR++VVH D+DDLG   H LSK+TG
Sbjct: 1   HVGDLGNIIA-NQNGRATFRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 420 NSDGRLGCGIIA 455
           NS  R+GCGIIA
Sbjct: 57  NSGARVGCGIIA 68


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 37/49 (75%)
 Frame = +3

Query: 213 HGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 359
           HGAP+ + RH+GDLGNI++   N + ++++ D ++SL G  +IIGRSLV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
 Frame = +3

Query: 12  MKAICIISGDVHGKIYFQQESANRP----LKISGYLLNLPRGLHGFHVHEYGDTSNGCTS 179
           +KA   +SG + G + F Q S N      L ++G    L   +H   V   G+ +  C +
Sbjct: 57  LKATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNT 115

Query: 180 A--GEHFNP---TNEDHGAPDAEIRHVGDL-GNIKSVGYNSLTEINMMDNVMSLYGPHNI 341
              G  ++P         A   +   VGDL G    +  N+++ +   D+ + L G H I
Sbjct: 116 VALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGI 174

Query: 342 IGRSLVVHT 368
            GR+LV+ T
Sbjct: 175 FGRTLVLKT 183


>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
          Length = 375

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 312 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 196
           RC  C  R  + C    L CPSR HA    R RR   +WD
Sbjct: 87  RCIPCGERGFSACRSGGLRCPSRSHAMRSMRTRRRARYWD 126


>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
          Length = 1446

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/82 (24%), Positives = 33/82 (40%)
 Frame = +3

Query: 75  ANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDL 254
           A + + I GY   +P G H  ++ +  +T         HF+P       P+   R   DL
Sbjct: 241 ARQDVVIDGY--RIPSGYHVAYLTKASNTDPSIFPGPNHFDPKRWRTSCPEVYERKNMDL 298

Query: 255 GNIKSVGYNSLTEINMMDNVMS 320
            ++K+    + T     DN  S
Sbjct: 299 NSVKASTTPTTTPDGFGDNAFS 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,714,728
Number of Sequences: 59808
Number of extensions: 559080
Number of successful extensions: 1171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)